PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009125115.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 335aa    MW: 38211.6 Da    PI: 8.0795
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009125115.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.91.4e-51171432128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                      pGfrFhPtdeelv++yLk+kv +++l++ e ik+vdiyk++PwdLpk ++ +ekewyf+++rd+ky++++r+nr+t  g+Wkatg+d++++s  
  XP_009125115.1  17 LPGFRFHPTDEELVSFYLKRKVLHRSLPF-ELIKKVDIYKYDPWDLPKLAAMGEKEWYFYCPRDRKYRNSTRPNRVTGGGFWKATGTDRPIYSLd 110
                     69**************************9.89***************8778899**************************************985 PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +++ +glkk+Lvfy+gra kg ktdW+mhe+rl
  XP_009125115.1 111 STRCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 143
                     6677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-5815186IPR003441NAC domain
PROSITE profilePS5100556.03816186IPR003441NAC domain
PfamPF023652.6E-2518143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDDEESNNVE RFDDVVLPGF RFHPTDEELV SFYLKRKVLH RSLPFELIKK VDIYKYDPWD  60
LPKLAAMGEK EWYFYCPRDR KYRNSTRPNR VTGGGFWKAT GTDRPIYSLD STRCIGLKKS  120
LVFYRGRAAK GIKTDWMMHE FRLPSLSDSH RSSSYPSYNN KKQHHNINNK EIPSSDAWAI  180
CRIFKKTNSV SSQRSVPQSW LHPAIPETSQ YNSVSQTTTL FASTDVFSNI PTRQNLSSSP  240
VDEPASFTES AAAYFASQML GVPYNIARNN GTGDAMFLRN SETENVLFPS NNEDNYFHNL  300
AGGLTHELPN VRSMVETGFE TTASEMSATY SPPNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-531818917171Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00537DAPTransfer from AT5G39820Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009125115.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0168761e-118AB016876.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKM21.
GenBankCP0026881e-118CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankHG9686031e-118HG968603.1 Arabidopsis thaliana T-DNA flanking sequence, clone GK-027D08-028756.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125115.10.0PREDICTED: putative NAC domain-containing protein 94
SwissprotQ9FIW50.0NAC94_ARATH; Putative NAC domain-containing protein 94
TrEMBLA0A397YLA00.0A0A397YLA0_BRACM; Uncharacterized protein
TrEMBLM4EI260.0M4EI26_BRARP; Uncharacterized protein
STRINGBra028441.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.11e-179NAC domain containing protein 94