PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009125111.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 400aa    MW: 44028.3 Da    PI: 7.1669
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009125111.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.81.2e-38113172261
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                     ++k+l+cprC+s++tk+Cyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ 
  XP_009125111.1 113 PDKILPCPRCNSMETKLCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKSL 172
                     7899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-31109170IPR003851Zinc finger, Dof-type
PfamPF027013.1E-31115171IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.959117171IPR003851Zinc finger, Dof-type
PROSITE patternPS013610119155IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MSDPAMKLFG KTIPLPELVC VDSSSSYTEH QHQNPVRLSD SCTGDDEEMG DSGLAGDDVW  60
FHGGDSESEK EEKANQCGEE SSNVTMASST KTDEESSSQN NETCSREGKL KKPDKILPCP  120
RCNSMETKLC YYNNYNVNQP RHFCKKCQRY WTAGGTMRNV PVGAGRRKNK SLASHYNRYV  180
GITSAEDMHK AAARTDPNLM TIGSDSVLCE SMASGLNLAE KSMLNTQTGL QEEPNEGLKI  240
TVPLKNKETV AISPRTWTVL PFYPPPAYWS CPGVSPGTWN SFTWMPQPIS PSGGSSPYSP  300
TLGKHSRDES IAEPGTKRIS GRCLWVPKTL RIDDPEEAAK SSIWETLGIK KDEKADTFRA  360
FRSSHKVKSC LSDGKLPGRR LELLANPAAL SRSANFHESS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.272234e-45root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vasculature of cotyledons and hypocotyls, leaves and roots. {ECO:0000269|PubMed:19619493}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269|PubMed:19619493}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009125111.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269|PubMed:19619493}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529391e-86AK352939.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-18-K13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125111.10.0PREDICTED: cyclic dof factor 2-like
SwissprotQ93ZL50.0CDF2_ARATH; Cyclic dof factor 2
TrEMBLM4EI220.0M4EI22_BRARP; Uncharacterized protein
STRINGBra028437.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137951825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.20.0cycling DOF factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]