PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009125052.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 1308aa    MW: 149565 Da    PI: 6.9196
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009125052.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS361.21.5e-1103317011371
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+avss+d ++a+ lL ++++++s++gd ++Rla+y++  L+arla++++++y al++++ts    s+ l+a++++  v+P+ k + 
  XP_009125052.1 331 LRTLLVSCAQAVSSNDRKMAEDLLRQVRQHSSSHGDGTERLAHYLADSLEARLAGTGTQIYTALSSKKTS---ASDMLKAYQTYISVCPFKKTAI 422
                     6789**************************************************************9999...9********************* PP

            GRAS  96 ltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                     + aN+ I+  + ++ +++HiiDf+is+G+QWp+L++ La R++g+ +lRiTg++ p+ g   +e ++etgerLa+++++ +vpfe+n  +a+++e
  XP_009125052.1 423 IFANHSIMHLAPTDaKTIHIIDFGISYGFQWPPLIHRLAWRRGGSCKLRITGIELPQRGfrPAEGVNETGERLARYCQRYNVPFEYNG-IAQKWE 516
                     *********99888799****************************************99*****************************.7***** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     +++le+L++++gE +aVn+ ++  +llde+v+++s+rd+vLkl+k+++P+v++ +    ++n++ F++rf e l +ys+lfd+ +++lpr +  r
  XP_009125052.1 517 TIKLEDLKLREGEFVAVNSLFRFRNLLDETVAVHSPRDAVLKLIKKIKPNVFIPAVLSGSYNAPFFVTRFREVLFHYSSLFDMCDTSLPRGDPMR 611
                     *********************************************************************************************** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvS 371
                     ++ E+e+ grei+nvvaceg+er+er e++++W++r ++aGF++++l+++ +++ kl+++  + s+++ v+++ ++l++gWk+r +++ +
  XP_009125052.1 612 VMFEKEFYGREIMNVVACEGSERVERPESYKQWQARAMRAGFRQLTLEKELVQKLKLMVESGYrSKEFDVDQDGNWLLQGWKGRIVYASC 701
                     ************************************************************99999********************99876 PP

2GRAS348.41.2e-10693113052373
            GRAS    2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94  
                      ++lL++cA+a+s+gd++ a  lL ++++ +sp gd+ qRla++f++AL+arl + ++ +    ++ ++ +++ s+ l+a++++   sP++++ 
  XP_009125052.1  931 RTLLTHCAQAISTGDKTTALDLLLQIRQDSSPMGDASQRLAHCFANALEARLRG-SPVIQTYYNAITSLKETASDILKAYRVYLSSSPFVTLM 1022
                      689**************************************************9.444444446666666679******************** PP

            GRAS   95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185 
                      ++   ++Il+a++ +e +Hi+Df+i +G+QWp ++q ++ R++ p +lRiTg++ p+ g   +e++eetg+rLa+++++++vpfe++++++++
  XP_009125052.1 1023 YFFSFRMILDAAKDAEVLHIVDFGILYGFQWPMFIQYMSGRKDVPRKLRITGIELPQRGlrPAERIEETGRRLAEYCKRFNVPFEYKAIASQH 1115
                      **********************************************************9*****************************9999* PP

            GRAS  186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 
                      +e+++l+e++++pgE+laVn  l+l++l de++  e  +rd+vLkl+++++P+v+v++  + + n++ F  rf ea+++y alfd+++++lpr
  XP_009125052.1 1116 WESIRLDEFNIRPGEVLAVNAGLRLKTLQDETGGEETcPRDAVLKLIRKMNPDVFVHAIVNGSFNAPFFISRFKEAVYHYYALFDMFDSTLPR 1208
                      *********************************999999****************************************************** PP

            GRAS  278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvs 369 
                      +++eri  Ere+ gre++nv+ace+ +r+er et+++W+ r+ +aGFk+ p+++++++  +  l+k    + + v+e+s++l++gWk+r+L++
  XP_009125052.1 1209 DNQERIRFEREFYGREAMNVIACEEGDRVERPETYRQWQVRMVRAGFKQKPVRDEIVELFREKLKKWRyHKDFVVDENSKWLLQGWKGRTLYA 1301
                      *****************************************************************9998999********************* PP

            GRAS  370 vSaW 373 
                       S+W
  XP_009125052.1 1302 SSCW 1305
                      **** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.277305683IPR005202Transcription factor GRAS
PfamPF035145.2E-108331701IPR005202Transcription factor GRAS
PROSITE profilePS5098561.0089041285IPR005202Transcription factor GRAS
PfamPF035144.0E-1049311305IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1308 aa     Download sequence    Send to blast
MGSYSAGFPG SFDNFDFNYG DGFYLDDQAL LEIPSPFPPP PPAPPHPDPY SHAADAESDF  60
SDSVLKYISQ VLMEEDMEEK PCMFHDALSL QAAEKSLYEA LGQKYPDHPE RLAHSPDGSS  120
PGYASSTTSS DWSFDCLENS RRPSWLHSPI SNNFVFQSTR SNPKPSGGSN VALKSSFNND  180
LVSNMFNDSE LAFQFNRGKE EASKFLPKSS QLVIDVESYI PPNNDPKEHH SVLPYRSTGK  240
KKHWREDEHF LSEERSKKQS AVYVDEAELS EMFDKVLLFG RPKEQPLCIL NDNFIKETAK  300
DDSSSSYKSD TTQQKHAASG NSYKKETTPD LRTLLVSCAQ AVSSNDRKMA EDLLRQVRQH  360
SSSHGDGTER LAHYLADSLE ARLAGTGTQI YTALSSKKTS ASDMLKAYQT YISVCPFKKT  420
AIIFANHSIM HLAPTDAKTI HIIDFGISYG FQWPPLIHRL AWRRGGSCKL RITGIELPQR  480
GFRPAEGVNE TGERLARYCQ RYNVPFEYNG IAQKWETIKL EDLKLREGEF VAVNSLFRFR  540
NLLDETVAVH SPRDAVLKLI KKIKPNVFIP AVLSGSYNAP FFVTRFREVL FHYSSLFDMC  600
DTSLPRGDPM RVMFEKEFYG REIMNVVACE GSERVERPES YKQWQARAMR AGFRQLTLEK  660
ELVQKLKLMV ESGYRSKEFD VDQDGNWLLQ GWKGRIVYAS CTLVPILFLD SSPSFDFDRN  720
PSFLADPTEE PDENDSSTTL LRYVTQILME ESAGDKQSMF YDSLALRKTE EMLQQVITDS  780
KAHSATSGSI GSSSSSWSSS VPVHEIVVRS MFSDAESDLQ FRRGLEEARK FLPNSDQWVF  840
NLEKPAVREV IKEERVKKSH QREVLDLEEQ VRSSKQSATN VEDVEVTDMF DKVLLLDGQC  900
DPQTLSSQET MSNKKKKKKK KKKKSQVIDF RTLLTHCAQA ISTGDKTTAL DLLLQIRQDS  960
SPMGDASQRL AHCFANALEA RLRGSPVIQT YYNAITSLKE TASDILKAYR VYLSSSPFVT  1020
LMYFFSFRMI LDAAKDAEVL HIVDFGILYG FQWPMFIQYM SGRKDVPRKL RITGIELPQR  1080
GLRPAERIEE TGRRLAEYCK RFNVPFEYKA IASQHWESIR LDEFNIRPGE VLAVNAGLRL  1140
KTLQDETGGE ETCPRDAVLK LIRKMNPDVF VHAIVNGSFN APFFISRFKE AVYHYYALFD  1200
MFDSTLPRDN QERIRFEREF YGREAMNVIA CEEGDRVERP ETYRQWQVRM VRAGFKQKPV  1260
RDEIVELFRE KLKKWRYHKD FVVDENSKWL LQGWKGRTLY ASSCWVPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-4232713051374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1914923KKKKKKKKKK
2915923KKKKKKKKK
3917923KKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009125052.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125052.10.0PREDICTED: scarecrow-like protein 33 isoform X3
SwissprotP0C8830.0SCL33_ARATH; Scarecrow-like protein 33
TrEMBLD7LKB70.0D7LKB7_ARALL; Scarecrow transcription factor family protein
STRINGscaffold_401365.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.10.0GRAS family protein