PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009125039.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 535aa    MW: 57900.1 Da    PI: 8.6543
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009125039.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.94.8e-29215274159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK+ kg ++pr+YYrCt a gCpv+++v+r+ +d +++++tYeg+Hnh+
  XP_009125039.1 215 MNDGCQWRKYGQKVAKGIPCPRAYYRCTVApGCPVRRQVQRCVDDMSILITTYEGTHNHP 274
                     58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-30201276IPR003657WRKY domain
SuperFamilySSF1182901.05E-26208276IPR003657WRKY domain
PROSITE profilePS5081128.162210276IPR003657WRKY domain
SMARTSM007747.6E-36215275IPR003657WRKY domain
PfamPF031066.0E-26216274IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MEVLKKLPTS DSIVKDEVAG SDGGIQESRK VSHELESANV EMREMKEENE KLKVMLEHIE  60
SDYKSLRLRY LNKVQQKSSA KPVPDNKNDH LNAEFVSSSD QEREFVSLSL GKRSSNSPSN  120
SIANKEEKTK LICLGAKEEE ELTNAGLTLG PAVGLAKENR AISSLEYSSS EEAPAMNKVT  180
GKRSSPSGGA DDNSQQNLAK RARVCVRARC DTLTMNDGCQ WRKYGQKVAK GIPCPRAYYR  240
CTVAPGCPVR RQVQRCVDDM SILITTYEGT HNHPLPLTAT AMASTTAAAA SMLLSGSSTS  300
GLDTEMIKNF KLYDNNSRLI NKPTVLSPLH PTATLDLTIP MPKPSSSPYS LNFNTFSSLQ  360
RFPSTSLNFS ASSSSSDSTS TINIPTIWGS GYASCSPVTD NKVHTGRPSF LNIGKNLPQN  420
PSLTETLTKA LTSDPSFHSV IAQAISTMVG SGNGDQQSAR TLNSLSITKQ QAAADSNNKN  480
KGCEGYFSSL LMSNMANPGM LSTLNLPSSE LPFTLFTTSS SSSKPSFSNE EKKRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-21202276174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009125039.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125039.10.0PREDICTED: probable WRKY transcription factor 72
SwissprotQ9LXG81e-165WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBLM4FHC70.0M4FHC7_BRARP; Uncharacterized protein
STRINGBra040505.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-139WRKY DNA-binding protein 72