PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009124885.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 264aa    MW: 30058.3 Da    PI: 7.5407
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009124885.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.93.6e-3232140197
                     EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                     f+k ltpsdv+k++rlv+pk++ae+h             + +e+++ lt+edesg+ W+++++y+++s++yvltkGW+++vk+++L +gD+v F+
  XP_009124885.1  32 FEKSLTPSDVGKLNRLVIPKQHAEKHfplnnagddvaaAETTEKGMLLTFEDESGKCWKFRYSYWNSSQSYVLTKGWSRYVKDKHLHAGDVVFFQ 126
                     99******************************99999977788**************************************************** PP

                     E-SSSEE..EEEEE CS
              B3  84 ldgrsefelvvkvf 97 
                     +++ +  + +++++
  XP_009124885.1 127 RHRFDLHRVFIGWR 140
                     54325555566665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-4027149IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.4E-3229144IPR015300DNA-binding pseudobarrel domain
CDDcd100174.38E-3031136No hitNo description
SMARTSM010198.5E-2432143IPR003340B3 DNA binding domain
PfamPF023622.1E-2932141IPR003340B3 DNA binding domain
PROSITE profilePS5086313.21132141IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MSGNHYSRDI HHNTPSVHHH QNYAVVDREY LFEKSLTPSD VGKLNRLVIP KQHAEKHFPL  60
NNAGDDVAAA ETTEKGMLLT FEDESGKCWK FRYSYWNSSQ SYVLTKGWSR YVKDKHLHAG  120
DVVFFQRHRF DLHRVFIGWR KRGEVSSPTA VSVVSQEARV NTTAYWSGLT TPYRQVHAST  180
SSYPNIHQEY SHYGAVAEIP TVVTGSSRTV RLFGVNLECH GDVVETPPCP DGYNGQHFYY  240
YSTPDPMNIS FAGEAMEQVG DGRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-48251451116B3 domain-containing transcription factor NGA1
5os9_B6e-48251451116B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009124885.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009124885.10.0PREDICTED: B3 domain-containing protein At3g11580-like
SwissprotQ8RYD31e-145Y3158_ARATH; B3 domain-containing protein At3g11580
TrEMBLA0A398AUU70.0A0A398AUU7_BRACM; Uncharacterized protein
TrEMBLM4FIU40.0M4FIU4_BRARP; Uncharacterized protein
STRINGBra041023.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.11e-148B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]