PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009124676.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 255aa    MW: 28990.7 Da    PI: 7.8391
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009124676.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.68.8e-163582148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+ eE e+l+  + q G ++W++I++  g+ R++k+c++rw +yl
   XP_009124676.1 35 RGPWSDEESEILKAFILQNGHRNWRSIPKLAGLMRCGKSCRLRWVNYL 82
                     89********************************************97 PP

2Myb_DNA-binding49.21.2e-1588132148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE++ ++++++ lG++ W++Ia+++g  Rt++++k+ w+++l
   XP_009124676.1  88 RGNFTKEEEDTIIHLHQTLGNK-WSKIASHLG--RTDNEIKNVWNTHL 132
                      89********************.********8..***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.3713082IPR017930Myb domain
SuperFamilySSF466893.81E-2534128IPR009057Homeodomain-like
SMARTSM007175.0E-113484IPR001005SANT/Myb domain
PfamPF002491.9E-133582IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-213689IPR009057Homeodomain-like
CDDcd001671.51E-83782No hitNo description
PROSITE profilePS5129423.36583136IPR017930Myb domain
SMARTSM007174.9E-1487134IPR001005SANT/Myb domain
PfamPF002492.1E-1488132IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2490135IPR009057Homeodomain-like
CDDcd001671.17E-890132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MNISYQILQK LKSVFVSVMG KGKAPCCDHS QVLKRGPWSD EESEILKAFI LQNGHRNWRS  60
IPKLAGLMRC GKSCRLRWVN YLRPGLKRGN FTKEEEDTII HLHQTLGNKW SKIASHLGRT  120
DNEIKNVWNT HLKKRSMKSN SSASSDVTNQ APSVSRSSSS SSSSSVSNNV IKSEKLNQEE  180
ELEEILVEDM ACGFEVNAPQ SLESLFEDRK VPPPITKPDS LEIRGKSDDE LCRQMVEPGL  240
DDYNEWLNYF DNQTF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-20331355107B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in cauline leaves and siliques. {ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in metal ions homeostasis, including iron ions (Fe) acquisition, via the regulation of NAS4 and NAS2 genes expression. Necessary for plant survival in alkaline soil where iron availability is greatly restricted. Triggers tolerance to nickel (Ni) and zinc (Zn) ions. {ECO:0000269|PubMed:24278034}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009124676.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates strongly in the root stele and in the outer layers of the lateral roots when exposed to iron (Fe)-deficient conditions (PubMed:24278034). Slightly induced by ethylene and by darkness conditions (PubMed:9839469). Accumulates upon potassium (K) depletion (PubMed:15489280). Induced by zinc (Zn) and cadmium (Cd) ions (PubMed:18088336). {ECO:0000269|PubMed:15489280, ECO:0000269|PubMed:18088336, ECO:0000269|PubMed:24278034, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009124676.20.0PREDICTED: myb-related protein Myb4-like
RefseqXP_022547794.10.0transcription factor MYB58-like
SwissprotQ9LTV41e-116MYB10_ARATH; Transcription factor MYB10
TrEMBLA0A078I1B41e-175A0A078I1B4_BRANA; BnaA01g30300D protein
TrEMBLM4FE231e-175M4FE23_BRARP; Uncharacterized protein
STRINGBra039344.1-P1e-176(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140961624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12820.11e-101myb domain protein 10
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]