PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009124484.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SBP
Protein Properties Length: 890aa    MW: 99139.6 Da    PI: 6.2445
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009124484.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.63.1e-42134211178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +Cqve+Ceadls++k+yhrrhkvCe+hska+++lv+g++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  XP_009124484.1 134 VCQVESCEADLSKVKDYHRRHKVCEMHSKATSALVAGIMQRFCQQCSRFHVLEEFDEGKRSCRRRLAGHNKRRRKTNP 211
                     6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.0E-34127196IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.488132209IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.97E-39134213IPR004333Transcription factor, SBP-box
PfamPF031109.3E-31135208IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.202.4E-7676782IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.71E-7678779IPR020683Ankyrin repeat-containing domain
CDDcd002041.48E-8681779No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 890 aa     Download sequence    Send to blast
MEARVEGEGQ HFYGYRGKRS VEWDLNDWKW DGDLFIATPL NPGVSQTMGR QFFPLGNSSN  60
SSSSCSEEGN GNITREVEKR RRAAAAATGE DTDNNNNNGG LSLKLGENGY DLNGEREGKK  120
TKLGGGSGTN HRSVCQVESC EADLSKVKDY HRRHKVCEMH SKATSALVAG IMQRFCQQCS  180
RFHVLEEFDE GKRSCRRRLA GHNKRRRKTN PEPAANGNPL SDDNQSSNYL LICLLKILSN  240
MHSANGSSDH QDLMPHLLKS LVSHAGEQLG KNLVELLLQG GSGLLAAPQE DSKQAPEIPR  300
QELYANGNRS EKLQTKVNDF DLNDIYIDSD DGTDLERSSP PTTTTNPATS SPDYPSWIHQ  360
TSRNSDSASD QSPSSSSEDA QMRTGRIVFK LFGKEPNDFP PVLRGQILDW LSHTPTDIES  420
YIRPGCIVLT IYLRQAETAW EELSDDMGFS LSKLLDLSDD PLWTSGWIYV RMQNQYAFVF  480
DGQVVVDTSL PLRSYDHSHI ISVRPLAVAA TGKAQFTVKG INLRRPGTRL LCAVGGKYLI  540
QENDDLKESN ECVSFSCDLP ITSGRGFMEI EDQGGLSSSF FPFIVVEEDD VCSEIRILET  600
TLEFTDTDSA KLAMEFIHEL GWLLRRSKLG VFSLARFKWL IEFSMDREWC AVIRKLLNMF  660
FEGAVGDSSS DAAALSELCL LHRAVRKNSK PMVEMLLRYV VPNQQRIHSL FRPDAAGPAG  720
LTPLHIAAGK DGSEDVLDAL TEDPSMVGIE AWRTSKDTTG FTPEDYARLR GHFSYIHLIQ  780
RKINKKSATE DHVVVNIPAS SISDREQKET KSGSSALEIT HGNNKLQCKL CDHKLVYGTA  840
RRSVAYRPAM LSMVAIAAVC VCVALLFKSC PEVLYVFQPF RWELLDYGTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-33125208184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.165000.0root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively during plant development. {ECO:0000269|PubMed:10524240}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00603PBMTransfer from AT2G47070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009124484.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009124484.10.0PREDICTED: squamosa promoter-binding-like protein 1 isoform X1
RefseqXP_018511566.10.0PREDICTED: squamosa promoter-binding-like protein 1 isoform X1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLM4FIV80.0M4FIV8_BRARP; Uncharacterized protein
STRINGBra041037.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30302764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]