PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009124240.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 366aa    MW: 40450.6 Da    PI: 6.1236
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009124240.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.74.1e-07444539
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    +C+ ++e++   +C+++  +lC +C  ++H+       H++
  XP_009124240.1  4 MCDFCGEQRSMVYCRSDAACLCLSCDRSIHSAnalskrHSR 44
                    6*****************************65677777765 PP
2zf-B_box21.74.2e-074693441
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg..........Htvvp 41
                     +C++++ ++++  C + ++ lC++C  ++H++          H++++
  XP_009124240.1 46 LVCERCNAHPATVRCVEERVSLCQNCDWSGHNNnnnsnslsshHKRQS 93
                    68*****************************88889999999888766 PP
3CCT60.84.5e-21309352144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R++a++RYkeK+k RkF+K++rY+sRKa+A+ R RvKGrF k+ 
  XP_009124240.1 309 RNNAVMRYKEKKKARKFDKTVRYASRKARADVRRRVKGRFIKAG 352
                     99**************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.712147IPR000315B-box-type zinc finger
CDDcd000211.96E-7447No hitNo description
SMARTSM003365.9E-9447IPR000315B-box-type zinc finger
PROSITE profilePS501198.9584394IPR000315B-box-type zinc finger
CDDcd000210.001464773No hitNo description
SMARTSM003360.794894IPR000315B-box-type zinc finger
PfamPF062034.0E-16309351IPR010402CCT domain
PROSITE profilePS5101715.08309351IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SIHSANALSK RHSRTLVCER CNAHPATVRC  60
VEERVSLCQN CDWSGHNNNN NSNSLSSHHK RQSISCYSGC PSSSELASIW SFCSDLAGQS  120
VCEQEIGMMN IDDDGQTNQN CNEDKKDVIV GSSSRLETSY AAHANSPFAK DIGVCEDDFY  180
DNLGMDEVDL ALENYEELFG TAFNSSGHLF GQCGIDSLFQ KHQAAPEGGN SVQPAESNDS  240
FMSSKTEPII CYTSKPAHSN ISFSGVTGES CAGDFQECGA SSSMQLLGDP PWYPQTSQDN  300
NAFSHSVTRN NAVMRYKEKK KARKFDKTVR YASRKARADV RRRVKGRFIK AGEAYDYDPL  360
TPTRSY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.319410.0leaf| silique
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009124240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009124232.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_009124240.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_009124250.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_009124257.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE50.0COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A3P6A0V50.0A0A3P6A0V5_BRACM; Uncharacterized protein
TrEMBLM4FFZ60.0M4FFZ6_BRARP; Uncharacterized protein
STRINGBra040020.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.40.0CONSTANS-like 9