PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009123829.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 170aa    MW: 19420.6 Da    PI: 8.7132
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009123829.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof104.37e-332177561
          zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                     + cprC+stntkfCyynn+s+sqPry Ck+Crr Wt+GGalrn+P+Gg+  k+k++
  XP_009123829.1 21 PRVCPRCNSTNTKFCYYNNHSVSQPRYKCKECRRNWTHGGALRNIPIGGSGHKKKST 77
                    678***********************************************9999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-201675IPR003851Zinc finger, Dof-type
PfamPF027012.7E-302276IPR003851Zinc finger, Dof-type
PROSITE profilePS5088425.7422276IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102460IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MDYSSVLAER GNEVNQEKPP PRVCPRCNST NTKFCYYNNH SVSQPRYKCK ECRRNWTHGG  60
ALRNIPIGGS GHKKKSTTID QPFVSQAVSA EIQQVSRHRQ PFLHAQETNQ FVESFGGSSY  120
GFDVDNHVGS FPEIRGDGVL PFQSFPPMDR SYFHDGLFQQ DYYIHRKLSS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009123829.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009123829.11e-126PREDICTED: dof zinc finger protein DOF4.3-like
SwissprotQ9SUA97e-49DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLM4FIY31e-125M4FIY3_BRARP; Uncharacterized protein
STRINGBra041062.1-P1e-126(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.13e-51Dof-type zinc finger domain-containing protein