PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009123772.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 161aa MW: 17511.7 Da PI: 7.7994 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 65.1 | 1.6e-20 | 2 | 87 | 18 | 98 |
DUF260 18 lapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 l+p++ +++q +++ +v+k+FG++ ++++++++pe++ +++++sl+yeA+ r+ +Pv+Gavg+++++++ ++q+++e++l++ XP_009123772.1 2 LRPCIqwiesAEAQGHATVFVAKFFGRAGLMSFISSVPESQSPALFQSLLYEACGRTVNPVNGAVGLLWTGNWSICQAAVETVLRG 87 5666666664567889***************************************************************9998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 13.688 | 1 | 90 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.8E-16 | 12 | 84 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
ILRPCIQWIE SAEAQGHATV FVAKFFGRAG LMSFISSVPE SQSPALFQSL LYEACGRTVN 60 PVNGAVGLLW TGNWSICQAA VETVLRGGSL RPMPELLTRD GGFGGFPSTT SDEASEICTE 120 MLNDCGDRSA YHHCRFSSSR TSRPTASPPN RKRLASEQQQ R |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.21861 | 0.0 | bud| silique |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009123772.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009115680.1 | 1e-116 | PREDICTED: LOB domain-containing protein 38-like | ||||
Refseq | XP_009123772.1 | 1e-117 | PREDICTED: LOB domain-containing protein 38-like, partial | ||||
Swissprot | Q9SN23 | 4e-91 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A291LR24 | 1e-115 | A0A291LR24_BRARR; Transcription factor LBD38 | ||||
TrEMBL | A0A397Y814 | 1e-115 | A0A397Y814_BRACM; Uncharacterized protein | ||||
TrEMBL | M4F4P0 | 1e-115 | M4F4P0_BRARP; Uncharacterized protein | ||||
STRING | Bra036040.1-P | 1e-116 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM821 | 28 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 2e-88 | LOB domain-containing protein 38 |