PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009123694.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Protein Properties

Length: 266aa MW: 30429.2 Da PI: 10.6453

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009123694.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	46.5	6.8e-15	167	254	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +++s+v+ +l lp +f+++ ++k ++ +tl de+g+++e + k+ + l++GW +F+ +++L gD +vF+l++ + f +v XP_009123694.1 167 FVKSMLQSHVSGGFWLGLPVHFCRSE-LQK-QDGVITLIDEEGEEFETVY--LAKRTG--LSGGWLGFAVSHNLVYGDALVFELVRPTVF--KVY 253 89*******************766.454.4458***********..555544..**********************987777..555 PP E CS B3 96 v 96 + XP_009123694.1 254 I 254 4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	8.7E-18	161	256	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.33E-21	163	257	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.54E-22	165	256	No hit	No description
Pfam	PF02362	6.7E-13	167	254	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.928	167	258	IPR003340	B3 DNA binding domain
SMART	SM01019	5.8E-20	167	258	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MELRATIQII ICQRSASFLH YRLHNPKRNK NISLSSDGKM VVAKQSPYEE FRLRRVEENK 60 KRMEALNLPN LCQTLRLTSV KTSPMKKSNL AREKQLVVVR RSSRISNASS SSPVYKEVVV 120 QRVHLPRRVS KGRDLSNRVY VSEEIREEAF SKAEKLQADL RNRFPSFVKS MLQSHVSGGF 180 WLGLPVHFCR SELQKQDGVI TLIDEEGEEF ETVYLAKRTG LSGGWLGFAV SHNLVYGDAL 240 VFELVRPTVF KVYITRVKSS GESPKM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009123694.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013659682.1	0.0	B3 domain-containing protein At5g42700-like
Swissprot	Q9FMZ4	1e-100	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	A0A398AD74	1e-162	A0A398AD74_BRACM; Uncharacterized protein
STRING	Bo2g116250.1	1e-162	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3744	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	1e-102	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]