PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009123435.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 387aa    MW: 42654.6 Da    PI: 6.8372
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009123435.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.5e-164893147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g W+ eEd  l ++v+++G+++W++ ar ++ gR++k+c++rw + 
   XP_009123435.1 48 KGTWSREEDVMLSELVEKFGPRNWSLMARSIP-GRSGKSCRLRWCNQ 93
                     799*****************************.***********985 PP
2Myb_DNA-binding51.32.8e-16100142145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      r+++T+ Ede ++ a++ +G++ W+ Ia+ ++ gRt++ +k++w+
   XP_009123435.1 100 RNPFTEVEDEAIITAHAIHGNK-WSIIAKLLP-GRTDNAIKNHWN 142
                      789*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.7354394IPR017930Myb domain
SuperFamilySSF466895.99E-3046141IPR009057Homeodomain-like
SMARTSM007177.4E-154796IPR001005SANT/Myb domain
PfamPF002491.4E-154893IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2349101IPR009057Homeodomain-like
CDDcd001672.59E-135092No hitNo description
PROSITE profilePS5129425.78795149IPR017930Myb domain
SMARTSM007174.2E-1699147IPR001005SANT/Myb domain
PfamPF002494.2E-14100142IPR001005SANT/Myb domain
CDDcd001679.55E-12102145No hitNo description
Gene3DG3DSA:1.10.10.604.9E-23102148IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MEGEMWGRSG IGEIEEAVAG GRRDEHDGGV AMFVGEGTSG RRRKKRIKGT WSREEDVMLS  60
ELVEKFGPRN WSLMARSIPG RSGKSCRLRW CNQLDPSLKR NPFTEVEDEA IITAHAIHGN  120
KWSIIAKLLP GRTDNAIKNH WNATLRRRCT DFETPTTNTA TRNLVLHDSR LDRTMNTFAS  180
SEETLSSGGG GGGGGHVTTP LVSSDGKEAT SMEISEEQCA DKANEEDISR QECNNDPPTL  240
FRPVAKLSSF NPYNHMEGSS TPHTLNQNKF QSCKQDTAML RLLEGAYSER FVPQKCGSGC  300
CSVSQKDSLL GPEFVDYLDP PTFPSYELAA IATDISSLAW LRSGLESSSV RTMEEAAGRL  360
RPQGTRGHRD HCLVSEQGKS RTNVLST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-364714957159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-364714957159MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-36471483104C-Myb DNA-Binding Domain
1msf_C2e-36471483104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14045RRRKKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.320780.0leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009123435.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6948280.0HQ694828.1 Brassica rapa subsp. chinensis transcription factor MYB1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009123435.10.0PREDICTED: myb protein-like
SwissprotQ425750.0MYB1_ARATH; Transcription factor MYB1
TrEMBLF8SVR20.0F8SVR2_BRARC; Transcription factor MYB1 protein
TrEMBLM4EZ140.0M4EZ14_BRARP; Uncharacterized protein
STRINGBra034057.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84922636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.10.0myb domain protein 1
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]