PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009122909.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 202aa MW: 23130.3 Da PI: 4.7715 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 34.6 | 2.5e-11 | 11 | 60 | 3 | 51 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEEEE- CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss.tgklyeyss 51 ie+ +r++ kR +g++K AeEL +L d+++++ f +gkl ++s XP_009122909.1 11 IEDRKKRNIACQKRMKGLMKMAEELTILSDTKACLTFFNRdDGKLVAWPS 60 99**********************************99852699999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 14.227 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.2E-10 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.67E-23 | 2 | 81 | No hit | No description |
SuperFamily | SSF55455 | 9.42E-18 | 2 | 93 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-5 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.4E-13 | 11 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-5 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MTRPKLKIAW IEDRKKRNIA CQKRMKGLMK MAEELTILSD TKACLTFFNR DDGKLVAWPS 60 QEEAESLIDR FYALPEIQRN MYADDQESYI KTITKKIEKK LEHSQKVVEE LEMDHLMFQI 120 QNGRMLADLS QTEVEKLMSY ASKKITVLTR ELGAEHPYTS VDEPFLGDEI PKATDVAPEG 180 DDEEYMKANE GESSKSGGAD NA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 15 | RPKLKIAWIEDRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009122909.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009122909.1 | 1e-149 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A3P6D1A5 | 1e-148 | A0A3P6D1A5_BRACM; Uncharacterized protein | ||||
TrEMBL | M4CYA2 | 1e-148 | M4CYA2_BRARP; Uncharacterized protein | ||||
STRING | Bra009199.1-P | 1e-149 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8774 | 13 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06500.1 | 1e-44 | AGAMOUS-like 96 |