PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009122908.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 192aa    MW: 21992.7 Da    PI: 4.7018
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009122908.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.91.1e-121059351
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEEEE- CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss.tgklyeyss 51
                    ie+  +rq t  +R +g++KKAeEL +L +a +++  f   +gkl  ++s
  XP_009122908.1 10 IEDRKKRQATCQRRMKGLMKKAEELTILSGASACLTFFNRdDGKLVVWPS 59
                    9***********************************99852689988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.1E-8159IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-5222IPR002100Transcription factor, MADS-box
CDDcd002669.26E-22482No hitNo description
PROSITE profilePS5006612.909448IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-19494IPR002100Transcription factor, MADS-box
PfamPF003194.3E-151057IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-52237IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MAPKLKFALI EDRKKRQATC QRRMKGLMKK AEELTILSGA SACLTFFNRD DGKLVVWPSQ  60
EKAQSLIDRF NALSETERNE NAYDPESYIE ANIKKMEKRL EHSRKAVEEL EMDHLMLQIQ  120
NGRMLADLSQ TEVEKLKSYA SKKITCLERE LRTPHPNTSV EPFLEDEGFL NDDEDMETSE  180
GESSESDGAD NA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009122908.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122908.11e-141PREDICTED: agamous-like MADS-box protein AGL80
RefseqXP_013715334.11e-141agamous-like MADS-box protein AGL80
TrEMBLA0A078JE451e-139A0A078JE45_BRANA; BnaA10g30620D protein
TrEMBLA0A3P6DNN31e-139A0A3P6DNN3_BRACM; Uncharacterized protein
TrEMBLM4CY791e-139M4CY79_BRARP; Uncharacterized protein
STRINGBra009176.1-P1e-140(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87741332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.11e-44AGAMOUS-like 96