PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009122788.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 522aa    MW: 58277.4 Da    PI: 8.0417
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009122788.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.3e-1874120148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEde l +av ++ g++Wk+Ia++++  Rt+ qc +rwqk+l
   XP_009122788.1  74 KGGWTPEEDETLRQAVDKYKGKRWKKIAEYFP-ERTEVQCLHRWQKVL 120
                      688*****************************.************986 PP
2Myb_DNA-binding582.1e-18126172148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd ++v++vk++G+  W++Ia+ ++ gR +kqc++rw+++l
   XP_009122788.1 126 KGTWTQEEDGIIVELVKKYGPAKWSLIAKSLP-GRIGKQCRERWHNHL 172
                      799*****************************.*************97 PP
3Myb_DNA-binding55.61.2e-17178221146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WTteE+  l++a + +G++ W+ Ia+ ++ gRt++ +k++w++
   XP_009122788.1 178 KDAWTTEEETALINAQRTHGNK-WAEIAKVLP-GRTDNAIKNHWNS 221
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.2869120IPR017930Myb domain
SuperFamilySSF466893.59E-1670127IPR009057Homeodomain-like
SMARTSM007172.9E-1673122IPR001005SANT/Myb domain
PfamPF002498.1E-1774120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-2576136IPR009057Homeodomain-like
CDDcd001671.40E-1477120No hitNo description
PROSITE profilePS5129430.89121176IPR017930Myb domain
SuperFamilySSF466899.9E-31123219IPR009057Homeodomain-like
SMARTSM007171.9E-16125174IPR001005SANT/Myb domain
PfamPF002496.8E-17126172IPR001005SANT/Myb domain
CDDcd001671.71E-14128172No hitNo description
Gene3DG3DSA:1.10.10.605.4E-26137179IPR009057Homeodomain-like
SMARTSM007171.8E-16177225IPR001005SANT/Myb domain
PROSITE profilePS5129421.801177227IPR017930Myb domain
PfamPF002492.1E-15178221IPR001005SANT/Myb domain
CDDcd001671.03E-12180223No hitNo description
Gene3DG3DSA:1.10.10.609.9E-23180227IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MMSSGSNPLA CSPEKEEEER SEMKIEILCM ENKQPTPASS EGSASIFLYS PQLKTPAPAS  60
PSHRRTSGPM RRAKGGWTPE EDETLRQAVD KYKGKRWKKI AEYFPERTEV QCLHRWQKVL  120
NPELIKGTWT QEEDGIIVEL VKKYGPAKWS LIAKSLPGRI GKQCRERWHN HLNPGIRKDA  180
WTTEEETALI NAQRTHGNKW AEIAKVLPGR TDNAIKNHWN SSLKKKLDFY LATCNLPPSA  240
TKIGDFADVD RDFKLSGATK PLKDSDSVTQ SSSVNTDADE DGVDHINSSS DLLEESAVNE  300
CACSPASVEC KPQLPNLRPM SPRINSKAFV RKKEENGLGT PRHGNLYYKS PLDFFYFASE  360
VDLRRMYGYE CGCSPSAAPS SPVSLMITPP CNKDSGLAAA TRSPESFLRE AARTFPNTPS  420
IFRKRRKVVL AKKTDDEDDV VNSVAKGADQ NENSKDSAEI STVGREALLL LETVDDSNGS  480
TFNASPPYRV RAKRRAVFKS RQLEFTSEKE NQPETSEEDK SV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-66732275159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-66732275159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed both in proliferating and maturing stages of leaves. {ECO:0000269|PubMed:26069325}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009122788.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122788.10.0PREDICTED: myb-related protein 3R-1 isoform X1
SwissprotQ6R0320.0MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLM4CZF00.0M4CZF0_BRARP; Uncharacterized protein
STRINGBra009597.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.20.0myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]