PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009122748.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 290aa    MW: 31803.6 Da    PI: 5.0861
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009122748.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.11.7e-124791147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+ E++++++a +++  + Wk+I   +g  +t  q++s+ qky
   XP_009122748.1 47 RESWTEGEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 91
                     789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.94E-164197IPR009057Homeodomain-like
PROSITE profilePS5129414.9424296IPR017930Myb domain
TIGRFAMsTIGR015572.2E-184594IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.8E-64597IPR009057Homeodomain-like
SMARTSM007177.6E-104694IPR001005SANT/Myb domain
PfamPF002493.0E-104791IPR001005SANT/Myb domain
CDDcd001671.31E-74992No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MTSSLSSNPM VAEEERPMET STDLIETTTT EAPEKKVRKA YTITKSRESW TEGEHDKFLE  60
ALQLFDRDWK KIEDFVGSKT VIQIRSHAQK YFLKVQKNGT LAHVPPPRPK RKAAHPYPQK  120
ASKNAQMSLH VSMSFPTQIN NVPGFTSWDD DTSALLNIAV SEVILPKDEL TTLCGGGEDV  180
IESNGSTSGG SPSASGIGSS SRTLSDSKTA NQAPSMHGLP DFAEVYNFIG SVFDPDSKGR  240
MKKLKEMDPI NFETVLLLMR NLTVNLSNPD FEPASEYSDA AGEGPEQLSS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.171471e-130flower
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250, ECO:0000269|PubMed:17363273}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00484DAPTransfer from AT5G02840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009122748.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3526240.0AK352624.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-06-K05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122748.10.0PREDICTED: protein REVEILLE 4 isoform X1
RefseqXP_013668304.10.0protein REVEILLE 4-like isoform X1
SwissprotQ6R0G41e-171RVE4_ARATH; Protein REVEILLE 4
TrEMBLA0A397XZ050.0A0A397XZ05_BRACM; Uncharacterized protein
STRINGBra009562.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152131118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02840.21e-141LHY/CCA1-like 1
Publications ? help Back to Top
  1. Xing H, et al.
    LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors.
    Plant Signal Behav, 2015. 10(3): p. e1010888
    [PMID:25848708]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]