PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009122332.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 246aa    MW: 28290.7 Da    PI: 6.9628
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009122332.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-0798117626
                     -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                     C+ f+  G C++Gd+C FaHg
  XP_009122332.1  98 CPAFRN-GACHRGDTCEFAHG 117
                     666666.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.26792119IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-492118IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-697117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-598120IPR000571Zinc finger, CCCH-type
SMARTSM0035619127150IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MLKSVNPMTF YDIGEPQFPT LGYIVSKPGN AGAYEIDPPL PTVDDVIYSS DEFRMYAYKI  60
KRCPRTRSHD WTECPYAHRG EKATRRDPRR YSYCAVACPA FRNGACHRGD TCEFAHGVFE  120
YWLHPARYRT RACNAGNMCQ RKVCFFAHAP EQLRQSEGKH RCRYAYRPVR TTVARGRNGD  180
GVGIREDGED FDTWQSPVKS GESELDINEE RLLKCWSGMS IVDDHYEPSD LDLNLSHIDW  240
ISALVD
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in embryo (at protein level). {ECO:0000269|PubMed:9501112}.
Functional Description ? help Back to Top
Source Description
UniProtEmbryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269|PubMed:9501112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009122332.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3507100.0AY350710.1 Brassica oleracea clone BAC Bo37N21, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122332.10.0PREDICTED: zinc finger CCCH domain-containing protein 54
SwissprotO650361e-154C3H54_ARATH; Zinc finger CCCH domain-containing protein 54
TrEMBLM4CYG00.0M4CYG0_BRARP; Uncharacterized protein
STRINGBra009257.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115272126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.11e-156C3H family protein