PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009122294.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 215aa MW: 24931.3 Da PI: 6.9004 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 76.9 | 2.7e-24 | 77 | 144 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse............kAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++Wt++LH++Fve+v++LGG+ +AtPk+il++m + Lt+++vkSHLQkYR++ XP_009122294.1 77 KTRIKWTTDLHDKFVECVNHLGGPMityyfqliikllEATPKQILKMMRTDELTIYKVKSHLQKYRTH 144 68*********************854444444554557****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.05E-12 | 76 | 144 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.5E-23 | 77 | 144 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-6 | 81 | 142 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 2.3E-11 | 114 | 145 | IPR006447 | Myb domain, plants |
Pfam | PF14379 | 5.8E-8 | 168 | 212 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MKFGRRHASD NDPSHEMCSE QATHCCKCYD ISEIFSTETR QTTSLSKQSS ECVETDISTE 60 PAGSSLASEF TSSSPIKTRI KWTTDLHDKF VECVNHLGGP MITYYFQLII KLLEATPKQI 120 LKMMRTDELT IYKVKSHLQK YRTHKHVQNS MQGTSLKEEE IHLEGSGIKE FMRLQDKVGQ 180 HLQEQLEIQR ELYLVVEEQN KKLHEMITFQ KQNNS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-14 | 77 | 146 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-14 | 77 | 146 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-14 | 77 | 146 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-14 | 77 | 146 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-14 | 77 | 146 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-14 | 77 | 146 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-14 | 77 | 146 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-14 | 77 | 146 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009122294.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018511282.1 | 1e-146 | PREDICTED: myb family transcription factor PHL5-like isoform X2 | ||||
TrEMBL | A0A397XQ85 | 1e-141 | A0A397XQ85_BRACM; Uncharacterized protein | ||||
STRING | Bra009230.1-P | 4e-81 | (Brassica rapa) | ||||
STRING | Bostr.10199s0037.1.p | 3e-85 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19527 | 7 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.1 | 3e-33 | G2-like family protein |