PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009122255.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NF-YA

Protein Properties

Length: 269aa MW: 30073 Da PI: 9.8942

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009122255.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	86.5	3.8e-27	127	185	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkld..eksrkpylheSRhkhAlrRpRgsgGrF 58 ++YVN+KQy++I++RRq+Rak+ ++k++ k ++py+h+SRh hA+rRpRgsgGrF XP_009122255.1 127 GTIYVNSKQYHGIIRRRQSRAKALLKNKINnfRKVKQPYMHHSRHLHAMRRPRGSGGRF 185 689********************99964226899********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.4E-28	124	188	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	33.672	125	188	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.6E-20	128	150	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	8.7E-23	128	185	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.6E-20	162	185	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MQTEYCKERE ELFSPPQASC LWNIAFGPPA LTQESLSSDS FAGVKVVTPE TESEQGGGKS 60 SRDHVSKPHV AFAMQSSCFE FGFAQPTIYK KHPDHVGQYY GVISGYGSQI SPNRVMLPLK 120 METEEDGTIY VNSKQYHGII RRRQSRAKAL LKNKINNFRK VKQPYMHHSR HLHAMRRPRG 180 SGGRFLNTKK ADAALQSRPS NPQSSEVFHP KNRTMTSSME TYGPNVSSSD VTSMNHFLSP 240 SIYYNGGNMG IPSKWIATAM DIGCCNLKT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	7e-14	129	193	5	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009122255.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC787687	1e-139	KC787687.1 Brassica napus transcription factor subunit NF-YA10.1 (NF-YA10.1) gene, complete cds.
GenBank	KC787688	1e-139	KC787688.1 Brassica napus transcription factor subunit NF-YA10.2 (NF-YA10.2) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009122255.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1
Swissprot	Q8LFU0	1e-115	NFYAA_ARATH; Nuclear transcription factor Y subunit A-10
TrEMBL	A0A397XWY1	0.0	A0A397XWY1_BRACM; Uncharacterized protein
STRING	Bra009200.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3008	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.2	1e-117	nuclear factor Y, subunit A10

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Zhang M,Hu X,Zhu M,Xu M,Wang L Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis. Sci Rep, 2017. 7(1): p. 1395 [PMID:28469131]