PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009122225.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 191aa    MW: 22010.1 Da    PI: 4.8514
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009122225.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF22.51.4e-071260451
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEEE- CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyeyss 51
                    e+  +r +   +R + ++  AeEL + Cd+ ++++ +  ++gkl  ++s
  XP_009122225.1 12 EERKRRATVCQRRMKELIQMAEELTIVCDMSACLVFYNrKNGKLVAWPS 60
                    5566666666777799*******************99735799999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.2E-4160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.194152IPR002100Transcription factor, MADS-box
CDDcd002669.81E-16285No hitNo description
SuperFamilySSF554551.57E-14294IPR002100Transcription factor, MADS-box
PfamPF003191.3E-91258IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MGRPKVKLAW VEERKRRATV CQRRMKELIQ MAEELTIVCD MSACLVFYNR KNGKLVAWPS  60
LEEAQSLIDC YNALPETERN MKADDEESSF IKTITKEIEK KLGLSRKAIE ELKMDNLMLQ  120
IKNGSRMIAD LSQTEIEKLK SYASEKVVYY DRELRKQHPN TSGNEPFLED DDGEMKIYEG  180
ESSESDGADN A
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009122225.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122225.11e-139PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLM4CY771e-138M4CY77_BRARP; Uncharacterized protein
STRINGBra009174.1-P1e-139(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87741332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.13e-34AGAMOUS-like 96