PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009122177.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 270aa    MW: 30609.4 Da    PI: 8.3935
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009122177.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.5e-083075346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      WT+eE +++ +a + +  +   +W ++a++++ g+t  ++   + k
   XP_009122177.1 30 TWTKEENKKFERALAIYADDtpdRWFKVAAMIP-GKTISDVMTQYSK 75
                     7*****************99*************.****999888866 PP
2Myb_DNA-binding409e-13130174347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
   XP_009122177.1 130 PWTEEEHRRFLLGLLKYGKGDWRNISRNFVGSKTPTQVASHAQKY 174
                      8****************************999************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.1212679IPR017884SANT domain
SMARTSM007171.7E-72779IPR001005SANT/Myb domain
SuperFamilySSF466891.15E-102983IPR009057Homeodomain-like
PfamPF002498.7E-72975IPR001005SANT/Myb domain
CDDcd001672.52E-73076No hitNo description
PROSITE profilePS5129418.108123179IPR017930Myb domain
SuperFamilySSF466891.0E-15125178IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.0E-11127179IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-16127178IPR006447Myb domain, plants
SMARTSM007179.9E-11127177IPR001005SANT/Myb domain
CDDcd001676.75E-10130174No hitNo description
PfamPF002493.8E-10130174IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
METLHPLLSH VPTSDHRFVV QEMMCLQTST WTKEENKKFE RALAIYADDT PDRWFKVAAM  60
IPGKTISDVM TQYSKLEEDL FDIEAGLVPI PGYPSAGFDQ LVSPYDHDLY RKRPNGGARG  120
FDQDRRKGVP WTEEEHRRFL LGLLKYGKGD WRNISRNFVG SKTPTQVASH AQKYYQRQLS  180
GAKDKRRPSI HDITTVNLLN TNITRPSSDH DRFLQQPDES KLGFTDKGNA EEGVMFLGQN  240
LSSVLSPYEP AFKFTGTNVY GGGAYGLARS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-1631971177RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.268100.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00489DAPTransfer from AT5G05790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009122177.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892010.0AC189201.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB005N03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122177.10.0PREDICTED: transcription factor DIVARICATA
RefseqXP_013715256.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H78e-71DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A397XQG40.0A0A397XQG4_BRACM; Uncharacterized protein
TrEMBLM4CY370.0M4CY37_BRARP; Uncharacterized protein
STRINGBra009134.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43402657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05790.11e-165MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]