PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009122162.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-X1
Protein Properties Length: 883aa    MW: 98983.3 Da    PI: 8.2919
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009122162.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.81.4e-05198216120
        zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                     CG H+C  lCH+GpC +Cp+
  XP_009122162.1 198 CG-HRCLLLCHPGPCASCPK 216
                     **.***************96 PP
2zf-NF-X117.21.1e-05241269220
        zf-NF-X1   2 G..........kHkCqklCHeGpCppCpq 20 
                     G          +H+C ++CH G+CppC++
  XP_009122162.1 241 GevcdkvldceIHSCREICHDGECPPCRE 269
                     555555555559***************85 PP
3zf-NF-X118.44.9e-06431455119
        zf-NF-X1   1 CG......kHkCqklCHeGpCppCp 19 
                     CG      +HkCq++CH+G+C pCp
  XP_009122162.1 431 CGkklkcrNHKCQSPCHRGECAPCP 455
                     777777779***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.0E-489157No hitNo description
PROSITE profilePS500898.69890152IPR001841Zinc finger, RING-type
PROSITE patternPS01359090151IPR019786Zinc finger, PHD-type, conserved site
CDDcd060081.65E-4186234No hitNo description
SMARTSM004380.056198216IPR000967Zinc finger, NF-X1-type
PfamPF014220.0046198215IPR000967Zinc finger, NF-X1-type
CDDcd060081.51E-8240288No hitNo description
SMARTSM004382.5E-4250269IPR000967Zinc finger, NF-X1-type
PfamPF014220.0022252268IPR000967Zinc finger, NF-X1-type
CDDcd060083.96E-6293333No hitNo description
SMARTSM004380.098303322IPR000967Zinc finger, NF-X1-type
PfamPF014220.71303321IPR000967Zinc finger, NF-X1-type
CDDcd060083.70E-8347396No hitNo description
SMARTSM004380.075357377IPR000967Zinc finger, NF-X1-type
PfamPF014220.0022357376IPR000967Zinc finger, NF-X1-type
SMARTSM004380.051410429IPR000967Zinc finger, NF-X1-type
PfamPF014220.0093410428IPR000967Zinc finger, NF-X1-type
CDDcd060085.74E-11427475No hitNo description
PfamPF014229.3E-4431455IPR000967Zinc finger, NF-X1-type
SMARTSM004387.5E-4437456IPR000967Zinc finger, NF-X1-type
SMARTSM00438110494515IPR000967Zinc finger, NF-X1-type
PfamPF014224.8504514IPR000967Zinc finger, NF-X1-type
SMARTSM00438190523568IPR000967Zinc finger, NF-X1-type
PfamPF0142277523532IPR000967Zinc finger, NF-X1-type
SMARTSM004388.8605636IPR000967Zinc finger, NF-X1-type
PfamPF014220.078605616IPR000967Zinc finger, NF-X1-type
SMARTSM004380.41646664IPR000967Zinc finger, NF-X1-type
PfamPF0142217647663IPR000967Zinc finger, NF-X1-type
SMARTSM0043823709738IPR000967Zinc finger, NF-X1-type
PfamPF014228.1711723IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 883 aa     Download sequence    Send to blast
MAGSATTTEF RWKPPPQPQP PTQQHQNISD SDSDSGSDSD NNHQQNRHND LSNSIFKAYL  60
DCHSSSSPSS LDLSKIQSFL ASSSSGAVSC LICLERIKRT DPTWSCTSSC FAVFHLFCIQ  120
NWARQCLDVH AALAVTRPST ETEPVWNCPK CRSSYLKSKI PSRYLCYCGK EEDPPADNPW  180
ILPHSCGEVC ERGLSNNCGH RCLLLCHPGP CASCPKLVKS KCFCGGVEDV RRCGHKLFSC  240
GEVCDKVLDC EIHSCREICH DGECPPCRER AVYRCCCGKV EEEEDCCERV FRCEGSCESK  300
LNCGKHVCER GCHGGECGLC PYQGKRSCPC GKKFYQGLSC DVAAPLCGGT CDKVLGCGYH  360
RCPERCHRGA CLETCRIVVT KSCRCGGTKK QVPCRQDVVC ERKCQRMRDC GKHPCRRRCC  420
DGQCPPCSEI CGKKLKCRNH KCQSPCHRGE CAPCPIMVSI SCACGQTHFE VPCGTENNQR  480
PPRCRKLCNI TPLCRHGQIQ KPHKCHYGAC PPCRLPCDEE YPCGHKCKLR CHGPRPPPNR  540
EFILKPTKKM LNVHVESTPG SPCPRCPELV WRPCVGHHLA AERMMVCSDK TQFACDNLCG  600
NPLPCGNHYC SFTCHPLEIK SSSSDKRSES CEKCELRCQK ERSPKCQHPC PRRCHPEDCP  660
PCKTLVKRSC HCGAMVHAFE CIEYNTLSEQ EQSKARSCRG PCHRKLPNCT HLCPEICHPG  720
QCPSPEKCGK KVVVRCKCLT LKKEWLCKDV QAAHRATGSD PKDVQKNHFG VGLLPCDSNC  780
KSKQQMAESV LQQRNVKEIE EKEEPSGKNA TKRRKRRERG QDIKETSRLQ KLTVAAKKVV  840
MVVMLIAVLV AVSYYGYKGI LWLSDWMNEV EEQRQKSRRY PRI
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Constitutively expressed in mesophyll and guard cells. {ECO:0000269|PubMed:22073231}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009122162.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122162.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLM4CY260.0M4CY26_BRARP; Uncharacterized protein
STRINGBra009123.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM109542730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors