PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009122044.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 577aa    MW: 64512.7 Da    PI: 6.7241
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009122044.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.57.8e-14268327155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k+++
  XP_009122044.1 268 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDKAARAYDLAALKYWN 327
                     57*******************666664478446**********99*************97 PP
2AP249.79.2e-16370421155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++grW A+I  +    ++k  +lg+f t+eeAa+a++ a+ k++g
  XP_009122044.1 370 SIYRGVTRHHQQGRWQARIGRVA---RNKDLYLGTFATEEEAAEAYDIAAIKFRG 421
                     57****************88842...35************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-16268336IPR016177DNA-binding domain
CDDcd000188.05E-20268337No hitNo description
PfamPF008478.6E-11268327IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-14269335IPR001471AP2/ERF domain
PROSITE profilePS5103218.558269335IPR001471AP2/ERF domain
SMARTSM003801.3E-23269341IPR001471AP2/ERF domain
PRINTSPR003675.2E-6270281IPR001471AP2/ERF domain
CDDcd000181.28E-10370429No hitNo description
SuperFamilySSF541719.81E-18370430IPR016177DNA-binding domain
PfamPF008473.0E-10370421IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-18371429IPR001471AP2/ERF domain
SMARTSM003802.2E-30371435IPR001471AP2/ERF domain
PROSITE profilePS5103219.401371429IPR001471AP2/ERF domain
PRINTSPR003675.2E-6411431IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MAPMTNWLTF SLSPMEMLRS SDDQSQFVSY DASSAASSSP YLLDNFYGWT NQKPQELFFK  60
EAAAASMADS TILTTFVDQQ THSQSHIPKL EDFLGGDVRY SDNSQSETQD SSSLSQIYDP  120
RHHQNQNQNQ TGFYSDHNPD FNKTMAGFQT AFSTNSGSEV DDSASIARTH LAGEYLGHAV  180
ESSGPELGFH GGANNTGGAL SLGVNINNNA NQRTSSDNYQ IVEHHYNVER INNNSEKRDS  240
EKEKPVVTVE TSDCSNKKVA DTFGQRTSIY RGVTRHRWTG RYEAHLWDNS CRREGQARKG  300
RQVYLGGYDK EDKAARAYDL AALKYWNAAA TTNFPIANYS KELEEMKHMT KLEFIASLRR  360
KSSGFSRGAS IYRGVTRHHQ QGRWQARIGR VARNKDLYLG TFATEEEAAE AYDIAAIKFR  420
GINAVTNFEM NRYDVEAIMK SALPIGGAAK RLKLSLESAA SAEQKPNVGH HHQQELHHLQ  480
QQQQQLQLQS STNNSSINFA LCPNSDVQSQ MIPCGIPFDA AALYHHQQQQ QQQNFFQHFH  540
AASDSAASNN NNSNVQGSMG LMAPNAAEFF LWPNQSY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.83140.0root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in inflorescence and youg floral mersitems, and in stem procambial cells. In floral mersitems, mostly expressed in the central dome. Disappears progressively from sepal primordia, but accumulates in second, third and fourth whorl organ primordia. Later, confined to occasional patches in stamens and in petal before disparearing progressively from flowers. {ECO:0000269|PubMed:15988559}.
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, hypocotyl, inflorescence, siliques, and pistils. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559, ECO:0000269|PubMed:16307362}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009122044.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3003130.0AB300313.1 Brassica rapa BcAP2 mRNA for AP2/EREBP transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122044.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLM4CXS90.0M4CXS9_BRARP; Uncharacterized protein
STRINGBra009026.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.20.0AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]