PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009121728.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 250aa    MW: 28448.1 Da    PI: 9.3478
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009121728.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.32e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    kri+n   rqvtfskRr+g+lKKA+ELSvLCd evavi+fs++gkl+e+ss
  XP_009121728.1  9 KRIDNANSRQVTFSKRRAGLLKKAHELSVLCDSEVAVIVFSKSGKLFEFSS 59
                    79***********************************************96 PP
2K-box66.11.3e-22841621088
           K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                     + +++e+ ++e++ Lk+ei++Lq+++ +++G++L+ LslkeLq+LeqqL+ sl ++R++K++    + e+l+++ +el+
  XP_009121728.1  84 KPENQEEDCTEVDLLKNEISKLQEKHLQMQGKGLNALSLKELQHLEQQLNVSLISVRERKEQRAELENETLRRQVQELR 162
                     5678999*******************************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.1E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.113161IPR002100Transcription factor, MADS-box
CDDcd002656.83E-43276No hitNo description
SuperFamilySSF554551.19E-30274IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.7E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-293859IPR002100Transcription factor, MADS-box
PfamPF014862.0E-1487162IPR002487Transcription factor, K-box
PROSITE profilePS5129711.22388174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGRGKIEIKR IDNANSRQVT FSKRRAGLLK KAHELSVLCD SEVAVIVFSK SGKLFEFSST  60
RMKRTLLRYD NYQRSSDAPL INYKPENQEE DCTEVDLLKN EISKLQEKHL QMQGKGLNAL  120
SLKELQHLEQ QLNVSLISVR ERKEQRAELE NETLRRQVQE LRSFLPSFNQ QYVPSYITCF  180
AIDPKNSPVN NSGLDDTNYS LQKTNSDTTL QLGLPGEAQA RRIEGNRESP SSDSVTTSTT  240
KATPQRINVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A8e-24172172MEF2 CHIMERA
6byy_B8e-24172172MEF2 CHIMERA
6byy_C8e-24172172MEF2 CHIMERA
6byy_D8e-24172172MEF2 CHIMERA
6bz1_A7e-24172172MEF2 CHIMERA
6bz1_B7e-24172172MEF2 CHIMERA
6bz1_C7e-24172172MEF2 CHIMERA
6bz1_D7e-24172172MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.108870.0bud| flower
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009121728.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBNU226810.0U22681.1 Brassica napus AGL15 type 2 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009121728.10.0PREDICTED: agamous-like MADS-box protein AGL15 isoform X2
SwissprotQ392951e-132AGL15_BRANA; Agamous-like MADS-box protein AGL15
TrEMBLA0A397XRG20.0A0A397XRG2_BRACM; Uncharacterized protein
STRINGBra008802.1-P1e-170(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.11e-110AGAMOUS-like 15