PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009121726.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 264aa MW: 30130.1 Da PI: 9.3318 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.2 | 2.2e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri+n rqvtfskRr+g+lKKA+ELSvLCd evavi+fs++gkl+e+ss XP_009121726.1 9 KRIDNANSRQVTFSKRRAGLLKKAHELSVLCDSEVAVIVFSKSGKLFEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 81.9 | 1.4e-27 | 84 | 174 | 10 | 100 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + +++e+ ++e++ Lk+ei++Lq+++ +++G++L+ LslkeLq+LeqqL+ sl ++R++K+ ll++q+ee++ ke++++ en++Lr++++e XP_009121726.1 84 KPENQEEDCTEVDLLKNEISKLQEKHLQMQGKGLNALSLKELQHLEQQLNVSLISVRERKELLLTKQLEESRLKEQRAELENETLRRQVQE 174 5678999*********************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.1E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.113 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.31E-30 | 2 | 74 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.69E-42 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 3.5E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.5E-17 | 87 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.428 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MGRGKIEIKR IDNANSRQVT FSKRRAGLLK KAHELSVLCD SEVAVIVFSK SGKLFEFSST 60 RMKRTLLRYD NYQRSSDAPL INYKPENQEE DCTEVDLLKN EISKLQEKHL QMQGKGLNAL 120 SLKELQHLEQ QLNVSLISVR ERKELLLTKQ LEESRLKEQR AELENETLRR QVQELRSFLP 180 SFNQQYVPSY ITCFAIDPKN SPVNNSGLDD TNYSLQKTNS DTTLQLGLPG EAQARRIEGN 240 RESPSSDSVT TSTTKATPQR INVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-23 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6byy_B | 1e-23 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6byy_C | 1e-23 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6byy_D | 1e-23 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6bz1_A | 1e-23 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6bz1_B | 1e-23 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6bz1_C | 1e-23 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6bz1_D | 1e-23 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.10887 | 0.0 | bud| flower |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009121726.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BNU22681 | 0.0 | U22681.1 Brassica napus AGL15 type 2 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009121726.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL15 isoform X1 | ||||
Swissprot | Q39295 | 1e-145 | AGL15_BRANA; Agamous-like MADS-box protein AGL15 | ||||
TrEMBL | M4CX55 | 0.0 | M4CX55_BRARP; Uncharacterized protein | ||||
STRING | Bra008802.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7518 | 25 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13790.1 | 1e-122 | AGAMOUS-like 15 |