PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009121726.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 264aa    MW: 30130.1 Da    PI: 9.3318
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009121726.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.22.2e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    kri+n   rqvtfskRr+g+lKKA+ELSvLCd evavi+fs++gkl+e+ss
  XP_009121726.1  9 KRIDNANSRQVTFSKRRAGLLKKAHELSVLCDSEVAVIVFSKSGKLFEFSS 59
                    79***********************************************96 PP

2K-box81.91.4e-278417410100
           K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     + +++e+ ++e++ Lk+ei++Lq+++ +++G++L+ LslkeLq+LeqqL+ sl ++R++K+ ll++q+ee++ ke++++ en++Lr++++e
  XP_009121726.1  84 KPENQEEDCTEVDLLKNEISKLQEKHLQMQGKGLNALSLKELQHLEQQLNVSLISVRERKELLLTKQLEESRLKEQRAELENETLRRQVQE 174
                     5678999*********************************************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.1E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.113161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-30274IPR002100Transcription factor, MADS-box
CDDcd002651.69E-42276No hitNo description
PRINTSPR004043.5E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.9E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-293859IPR002100Transcription factor, MADS-box
PfamPF014861.5E-1787172IPR002487Transcription factor, K-box
PROSITE profilePS5129713.42888178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MGRGKIEIKR IDNANSRQVT FSKRRAGLLK KAHELSVLCD SEVAVIVFSK SGKLFEFSST  60
RMKRTLLRYD NYQRSSDAPL INYKPENQEE DCTEVDLLKN EISKLQEKHL QMQGKGLNAL  120
SLKELQHLEQ QLNVSLISVR ERKELLLTKQ LEESRLKEQR AELENETLRR QVQELRSFLP  180
SFNQQYVPSY ITCFAIDPKN SPVNNSGLDD TNYSLQKTNS DTTLQLGLPG EAQARRIEGN  240
RESPSSDSVT TSTTKATPQR INVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-23172172MEF2 CHIMERA
6byy_B1e-23172172MEF2 CHIMERA
6byy_C1e-23172172MEF2 CHIMERA
6byy_D1e-23172172MEF2 CHIMERA
6bz1_A1e-23172172MEF2 CHIMERA
6bz1_B1e-23172172MEF2 CHIMERA
6bz1_C1e-23172172MEF2 CHIMERA
6bz1_D1e-23172172MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.108870.0bud| flower
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009121726.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBNU226810.0U22681.1 Brassica napus AGL15 type 2 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009121726.10.0PREDICTED: agamous-like MADS-box protein AGL15 isoform X1
SwissprotQ392951e-145AGL15_BRANA; Agamous-like MADS-box protein AGL15
TrEMBLM4CX550.0M4CX55_BRARP; Uncharacterized protein
STRINGBra008802.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75182538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.11e-122AGAMOUS-like 15