PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009121636.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 197aa MW: 22966 Da PI: 9.327 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.2 | 4.5e-19 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd++l d+vk +G+g+W++Ia++ g++R++k+c++rw +yl XP_009121636.1 17 KGLWTVEEDKILMDYVKAHGKGHWNRIAKKTGLKRCGKSCRLRWMNYL 64 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 60.5 | 3.5e-19 | 70 | 115 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++l+++++k+lG++ W++Ia++++ gRt++q+k++w+++l XP_009121636.1 70 RGNFTDQEEDLIIRLHKLLGNR-WSLIAKRVP-GRTDNQVKNYWNTHL 115 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.95 | 12 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.85E-31 | 15 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-15 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-17 | 17 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-25 | 18 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.33E-11 | 20 | 64 | No hit | No description |
PROSITE profile | PS51294 | 28.343 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-18 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-18 | 70 | 115 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.04E-13 | 72 | 115 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-27 | 72 | 119 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045165 | Biological Process | cell fate commitment | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048765 | Biological Process | root hair cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MRKKVSSGEE GNNEYKKGLW TVEEDKILMD YVKAHGKGHW NRIAKKTGLK RCGKSCRLRW 60 MNYLSPNVKR GNFTDQEEDL IIRLHKLLGN RWSLIAKRVP GRTDNQVKNY WNTHLSKKLG 120 IKDPKNKPSN GDIVYQINLT NPTETLEETK ISNINDNDEI QEDRHGSNYL SSLWVHDDTF 180 ELSTLTNMME FLDGHCF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-29 | 17 | 119 | 7 | 108 | B-MYB |
1h8a_C | 7e-29 | 12 | 119 | 22 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Restricted to roots and hypocotyl. Specifically expressed in root non-hair developing cells (atrichoblasts) at the N position. Also present in lateral root cap cells. In hypocotyls, expressed within files of epidermal cells located outside a single cortical cell equivalent to roots N cells (at protein level). {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:16207757}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC. {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:11585796, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16207757}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009121636.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transcriptional activation correlates with reduced histone acetylation on H3 and H4 mediated by HDA18 in N cells. Repressed by CPC in hair cells (H position). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:16176989}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ317141 | 0.0 | HQ317141.1 Brassica rapa subsp. rapa cultivar Tsuda MYB domain protein 66 (MYB66) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009121636.1 | 1e-145 | PREDICTED: transcription factor WER isoform X1 | ||||
Refseq | XP_013667707.1 | 1e-145 | transcription factor WER isoform X1 | ||||
Swissprot | Q9SEI0 | 1e-130 | WER_ARATH; Transcription factor WER | ||||
TrEMBL | A0A397XW86 | 1e-144 | A0A397XW86_BRACM; Uncharacterized protein | ||||
TrEMBL | M4CWZ3 | 1e-144 | M4CWZ3_BRARP; Uncharacterized protein | ||||
STRING | Bra008740.1-P | 1e-145 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 1e-123 | myb domain protein 66 |