PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009121607.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 551aa MW: 59656.7 Da PI: 6.2012 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91 | 9.1e-29 | 231 | 290 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+ +v+r+aed +++++tYeg+H h+ XP_009121607.1 231 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRTQVQRCAEDMSILITTYEGTHSHP 290 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.2E-30 | 216 | 292 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-26 | 224 | 292 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.001 | 226 | 292 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.9E-34 | 231 | 291 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-25 | 232 | 290 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 551 aa Download sequence Send to blast |
MEVILKLPTS DSLLKDKVLG SAQIHEATKV EEDHQELESA KAEMSEVKEE NEKLKGMLER 60 IESDYKTLKL RFFDIIHQEE PSNNQTQDQN MIDLPKATTD LSSLDQEREL VSLSLGRRSS 120 SPSDNSSKKE EKTDATSKKV NDDEELTKAG LTLGFNSGNG RDPSVANPAN SSLENNLEDA 180 PGETWPPTKV TGKRSSPAPA SGGDVDGEGG QQNPVKRARV CVRARCDTPT MNDGCQWRKY 240 GQKIAKGNPC PRAYYRCTVA PGCPVRTQVQ RCAEDMSILI TTYEGTHSHP LPLSATTMAS 300 TTSAAASMLL SGSSLSSAAE MIGNNLYDNS RFINNNSNKS FYSPTLHSPL HPTVTLDLTT 360 PQHSSSSLSS LNFNKFPNSF QRFPSTSLNF SSNSSSSNSS LLNQPATWGN GYSSYTPYPY 420 NNVQFGTSNQ VKTVQNNQSL TETLTKALTS DPSFHSVIAA AISSMVGSNG EQQMVGPRHP 480 TSDSVQRTAA TENNKGRGGY FSSLLMSNII ANNQTGASLD QPSSQLTSLS MFNNSSSSSS 540 TTSFVNKEEK S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 7e-21 | 218 | 292 | 1 | 74 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009121607.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF430078 | 0.0 | KF430078.1 Brassica rapa WRKY transcription factor 72 (WRKY72) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001288849.1 | 0.0 | probable WRKY transcription factor 72 | ||||
Refseq | XP_013667722.1 | 0.0 | probable WRKY transcription factor 72 | ||||
Swissprot | Q9LXG8 | 0.0 | WRK72_ARATH; Probable WRKY transcription factor 72 | ||||
TrEMBL | M4CWX2 | 0.0 | M4CWX2_BRARP; Uncharacterized protein | ||||
STRING | Bra008719.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2959 | 28 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15130.1 | 0.0 | WRKY DNA-binding protein 72 |