PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009121598.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ZF-HD
Protein Properties Length: 263aa    MW: 28578 Da    PI: 7.9371
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009121598.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.46.4e-3254109458
     ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                     + YkeClkNhAa +Ggha+DGCgEf+ps++ + +++++l+C ACgCHRnFHRre +
  XP_009121598.1  54 AAYKECLKNHAAGIGGHALDGCGEFIPSPTFNtSDPTSLTCDACGCHRNFHRREDD 109
                     68****************************99899******************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.5E-2655108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.6E-3156107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-2356107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.38256107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.03E-16169231IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-26169231IPR009057Homeodomain-like
TIGRFAMsTIGR015658.2E-25174230IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDVIATSATI VSHLDSQQPM TQAPTRIQPA KPISFSNGKH HHDHQHHASQ VVVAAYKECL  60
KNHAAGIGGH ALDGCGEFIP SPTFNTSDPT SLTCDACGCH RNFHRREDDL SAVSAAVPRI  120
EFRPHNRHQL PPPPLPPVGV GSQDDDDPAS PPPISSSYML LALSGRATAA PVSRKRFRTK  180
FSEFQKGKMF EFAERVGWRM PKADDVDVVE FCREIGVERS VFKVWMHNNK TPGRGGGARR  240
ANGDGGVGDD RENVPTNGSF AST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-211732371680ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009121598.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009121598.10.0PREDICTED: zinc-finger homeodomain protein 8
RefseqXP_013667736.10.0zinc-finger homeodomain protein 8-like
SwissprotQ9LXG01e-124ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLM4CWW50.0M4CWW5_BRARP; Uncharacterized protein
STRINGBra008712.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22202575
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.11e-109homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]