PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009121515.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Nin-like | ||||||||
Protein Properties | Length: 426aa MW: 47269.5 Da PI: 4.4828 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 76.3 | 3.6e-24 | 331 | 381 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + +++l+d+s++F+lpi++AA+ + +c+Tv+K+iCR+ G+ RWPhRkiksl XP_009121515.1 331 TGKLKLKDISMHFHLPIQEAARRMSLCPTVVKKICRRGGLYRWPHRKIKSL 381 56899********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.53 | 312 | 401 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.0E-20 | 334 | 381 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MAGDDDPKPP GLEDKDDGDP YYEPFSEEEL QNLMSNQNPN LMDFAFTENP LPPPTTTPIT 60 IATSDIIETE MLNQLSLTIP NCDDTDDFLV TSFDDDIDLS WDLSDIPSEF LNDNMDSNIL 120 GEIGTNDDNG NIVGGTGTLE VSTRVFVENG PNVEAGGGSS APITPTVSNG ILVCTCCNLL 180 RTLIHSNGQE MMRLDFHGGI GYFCHAILEI HRLDGSTEPQ YQTIDLKFLS IEDVKRFIED 240 YLAARAACGF GVVEDTKADF YQAMNPNFSN NQPPMLALPP VDDVPMRQAI VPDPALNVPS 300 VPLYVGLRDE PPVSKGKKRK QTPLAIQRER TGKLKLKDIS MHFHLPIQEA ARRMSLCPTV 360 VKKICRRGGL YRWPHRKIKS LLRKISSLKS SLETTKDAQA KARVEAEIER LEKQINEICS 420 EALKYA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.23359 | 0.0 | flower |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009121515.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009121515.1 | 0.0 | PREDICTED: uncharacterized protein LOC103846356 | ||||
TrEMBL | A0A397XVZ0 | 0.0 | A0A397XVZ0_BRACM; Uncharacterized protein | ||||
TrEMBL | M4CWP9 | 0.0 | M4CWP9_BRARP; Uncharacterized protein | ||||
STRING | Bra008646.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4076 | 23 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 6e-08 | RWP-RK domain-containing protein |