PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009121216.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 495aa    MW: 55310.6 Da    PI: 7.232
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009121216.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.25.7e-083213581954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +++  LA+ +gL+  qV++WF N R +
  XP_009121216.1 321 FEHflHPYPKDSDKIMLARXTGLSRGQVSNWFINARVR 358
                     554459******************************88 PP
2BELL120.85.9e-39183254172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     erqelq+k +kLls+l+eVdkrYkqy++q+q+v+ssF+++ag+g+ kpYt+l l++iSrhFrc++dai+ qi
  XP_009121216.1 183 ERQELQSKLTKLLSILDEVDKRYKQYYHQMQIVVSSFDVIAGCGATKPYTALSLQTISRHFRCVRDAISVQI 254
                     79*******************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.0E-63123252IPR006563POX domain
PfamPF075261.6E-43129251IPR006563POX domain
PROSITE profilePS5007111.37299362IPR001356Homeobox domain
SMARTSM003893.8E-8302366IPR001356Homeobox domain
CDDcd000866.11E-11302363No hitNo description
SuperFamilySSF466892.1E-16303368IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-26305367IPR009057Homeodomain-like
PfamPF059204.1E-17319358IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MATYYKSSGS SDIYSRPIAS DFVPGNAMIY TNPAVSYPET FPGEANYVSA SKDVQVLSSF  60
GGGASQMFEI QDSGSWRDQE DNDRNCFPVM MRPTTEQGLS LGLSSQTETM RGNNNEYATE  120
AVSGFTRTIH NSKYLKAAQE LLGEAVNVKK ALKQFQPEGE TINEEKEYKL EESNRNPDIP  180
QGERQELQSK LTKLLSILDE VDKRYKQYYH QMQIVVSSFD VIAGCGATKP YTALSLQTIS  240
RHFRCVRDAI SVQILVIRKS LGGEHGGLDG KGVGISRLRN VDQQVRQQRA LQRLGVMQPH  300
TWRPQRGLPD SSVLILRAWL FEHFLHPYPK DSDKIMLARX TGLSRGQVSN WFINARVRLW  360
KPMVEEIYKE EFTDALKESG PNLSSRNTPA TTEIQEQHQM ESSSNNVVAI SSMGQNSVAH  420
AGDRFMMVTE MTRHGSGGMS LTLGIKNSDA HSDVSMSGVI NNXKNTIPAN DFQYLSSGNH  480
QHRLGPSQLF HDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A7e-15308366563Homeobox protein Meis2
3k2a_B7e-15308366563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009121216.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009121216.10.0PREDICTED: LOW QUALITY PROTEIN: BEL1-like homeodomain protein 7
SwissprotQ9SIW10.0BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBLA0A3N6R4L60.0A0A3N6R4L6_BRACR; Uncharacterized protein
STRINGBra001976.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28692563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.10.0BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]