PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009121157.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 896aa MW: 99407 Da PI: 4.7022

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009121157.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	88	7.8e-28	610	660	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i l++l++yF++++kdAAk++gvc+T+LKriCR++GI RWP+Rkik++ XP_009121157.1 610 EKTIGLDVLRQYFAGSLKDAAKSIGVCPTTLKRICRHHGITRWPSRKIKKV 660 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.836	599	680	IPR003035	RWP-RK domain
Pfam	PF02042	6.7E-24	613	660	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.29E-24	788	883	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.5E-23	796	879	No hit	No description
PROSITE profile	PS51745	26.065	798	881	IPR000270	PB1 domain
SMART	SM00666	3.0E-26	798	881	IPR000270	PB1 domain
Pfam	PF00564	4.9E-16	799	880	IPR000270	PB1 domain
CDD	cd06407	4.76E-43	799	880	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 896 aa Download sequence Send to blast
MGLDMEDDGG SDGGEGNGGF SPNSSFGAFP ETAMDLDFMD ELLFDGCWLE TTDSKSLKET 60 EEAASDSTAM NANSSFLCFG ENPSQDNFSN EETERMNQEG FDQAEKFLLD EAEVGRSWWI 120 APRTREDPCS SVKERLLRAI SGLEEAVPDK DFLVQIWVPF QQEGKNFLTT LAQPHLFNQK 180 YSSLAKYRHV SETYNFPADE GSTEGGLPGR VFLQKFPEWT PDVRFFRSDE YPRIKEAQKC 240 DVRGSLALPV FERCSGTCLG VVEVVTTTQK MNYRPELENI CKALEAVDLR SSSNLKPPNN 300 EVYNDFYYAA LPEISDFLAS VCRRYDLPLA LSWAPCAQQG KGGSRHSDEN FSQCVSTIDS 360 ACFVLDEESK YFLEACSEHH LLQGEGIVGK AFKATKLCFV PEVTTFSKTN YPLAHHAKIS 420 GLHAALAVPL KSKCNGLVEF VLEFFFPKGC LDTEAKQEML KSLSATLQQD FRSSNLVIDK 480 DLELEVVLPV REDMVLSENP LTGAETAEAL REIHLLQESS WISHMIKANE KGKDVSLSWE 540 YQNEDPKDEF KLSPGWDNSQ LDPAPNNIPS EAEQFQQGST PGLRVDAGPS TESASTGGRR 600 PGEKRRTKTE KTIGLDVLRQ YFAGSLKDAA KSIGVCPTTL KRICRHHGIT RWPSRKIKKV 660 GHSLKKLQLV MDSVQGAQGS IPLDSFYTSF PELSSPNISS NGSSLKNNEQ LHHYNVPIEN 720 GGPGEDKPAP RSPSSSCSGS NTNTPNADGV VKEAHSEAEL QNGNQEETKC LARTQSHNIF 780 KEPPLPGSSK MSFRDGGGIK VKATFGEAII RFTLLPSWGY TELQQEITRR FNIVDVSWFD 840 LKYLDDDEEW VLLTCEADLE ECIDIYRSSQ SQTIKISLHD PFQVKLGGSF GSSGPS

Sequence ? help Back to Top

Protein Sequence Length: 896 aa Download sequence Send to blast

MGLDMEDDGG SDGGEGNGGF SPNSSFGAFP ETAMDLDFMD ELLFDGCWLE TTDSKSLKET  60
EEAASDSTAM NANSSFLCFG ENPSQDNFSN EETERMNQEG FDQAEKFLLD EAEVGRSWWI  120
APRTREDPCS SVKERLLRAI SGLEEAVPDK DFLVQIWVPF QQEGKNFLTT LAQPHLFNQK  180
YSSLAKYRHV SETYNFPADE GSTEGGLPGR VFLQKFPEWT PDVRFFRSDE YPRIKEAQKC  240
DVRGSLALPV FERCSGTCLG VVEVVTTTQK MNYRPELENI CKALEAVDLR SSSNLKPPNN  300
EVYNDFYYAA LPEISDFLAS VCRRYDLPLA LSWAPCAQQG KGGSRHSDEN FSQCVSTIDS  360
ACFVLDEESK YFLEACSEHH LLQGEGIVGK AFKATKLCFV PEVTTFSKTN YPLAHHAKIS  420
GLHAALAVPL KSKCNGLVEF VLEFFFPKGC LDTEAKQEML KSLSATLQQD FRSSNLVIDK  480
DLELEVVLPV REDMVLSENP LTGAETAEAL REIHLLQESS WISHMIKANE KGKDVSLSWE  540
YQNEDPKDEF KLSPGWDNSQ LDPAPNNIPS EAEQFQQGST PGLRVDAGPS TESASTGGRR  600
PGEKRRTKTE KTIGLDVLRQ YFAGSLKDAA KSIGVCPTTL KRICRHHGIT RWPSRKIKKV  660
GHSLKKLQLV MDSVQGAQGS IPLDSFYTSF PELSSPNISS NGSSLKNNEQ LHHYNVPIEN  720
GGPGEDKPAP RSPSSSCSGS NTNTPNADGV VKEAHSEAEL QNGNQEETKC LARTQSHNIF  780
KEPPLPGSSK MSFRDGGGIK VKATFGEAII RFTLLPSWGY TELQQEITRR FNIVDVSWFD  840
LKYLDDDEEW VLLTCEADLE ECIDIYRSSQ SQTIKISLHD PFQVKLGGSF GSSGPS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009121157.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009121157.1	0.0	PREDICTED: protein NLP1 isoform X2
Refseq	XP_013666608.1	0.0	protein NLP1-like isoform X2
Swissprot	Q8H111	0.0	NLP1_ARATH; Protein NLP1
TrEMBL	M4CCU4	0.0	M4CCU4_BRARP; Uncharacterized protein
STRING	Bra002025.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	0.0	Nin-like family protein

Publications ? help Back to Top
Suzuki W,Konishi M,Yanagisawa S The evolutionary events necessary for the emergence of symbiotic nitrogen fixation in legumes may involve a loss of nitrate responsiveness of the NIN transcription factor. Plant Signal Behav, 2014. [PMID:24270631]