PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009121154.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 899aa MW: 99735.4 Da PI: 4.7022

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009121154.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	88	7.9e-28	613	663	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i l++l++yF++++kdAAk++gvc+T+LKriCR++GI RWP+Rkik++ XP_009121154.1 613 EKTIGLDVLRQYFAGSLKDAAKSIGVCPTTLKRICRHHGITRWPSRKIKKV 663 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.836	602	683	IPR003035	RWP-RK domain
Pfam	PF02042	6.7E-24	616	663	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.57E-24	791	886	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.5E-23	799	882	No hit	No description
SMART	SM00666	3.0E-26	801	884	IPR000270	PB1 domain
PROSITE profile	PS51745	26.065	801	884	IPR000270	PB1 domain
Pfam	PF00564	4.9E-16	802	883	IPR000270	PB1 domain
CDD	cd06407	4.96E-43	802	883	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 899 aa Download sequence Send to blast
MGLDMEDDGG SDGGEGNGGF SPNSSFGAFP ETAMDLDFMD ELLFDGCWLE TTDSKSLKET 60 EEAASDSTAM NANSSFLCFG ENPSQDNFSN EETERMNQEG FDQAEKFLLD EAEVGRSWWI 120 APRTREDPCS SVKERLLRAI SGLEEAVPDK DFLVQIWVPF QQEGKNFLTT LAQPHLFNQK 180 YSSLAKYRHV SETYNFPADE GSTEGGLPGR VFLQKFPEWT PDVRFFRSDE YPRIKEAQKC 240 DVRGSLALPV FERCSGTCLG VVEVVTTTQK MNYRPELENI CKALEAVDLR SSSNLKPPNN 300 ESLQVYNDFY YAALPEISDF LASVCRRYDL PLALSWAPCA QQGKGGSRHS DENFSQCVST 360 IDSACFVLDE ESKYFLEACS EHHLLQGEGI VGKAFKATKL CFVPEVTTFS KTNYPLAHHA 420 KISGLHAALA VPLKSKCNGL VEFVLEFFFP KGCLDTEAKQ EMLKSLSATL QQDFRSSNLV 480 IDKDLELEVV LPVREDMVLS ENPLTGAETA EALREIHLLQ ESSWISHMIK ANEKGKDVSL 540 SWEYQNEDPK DEFKLSPGWD NSQLDPAPNN IPSEAEQFQQ GSTPGLRVDA GPSTESASTG 600 GRRPGEKRRT KTEKTIGLDV LRQYFAGSLK DAAKSIGVCP TTLKRICRHH GITRWPSRKI 660 KKVGHSLKKL QLVMDSVQGA QGSIPLDSFY TSFPELSSPN ISSNGSSLKN NEQLHHYNVP 720 IENGGPGEDK PAPRSPSSSC SGSNTNTPNA DGVVKEAHSE AELQNGNQEE TKCLARTQSH 780 NIFKEPPLPG SSKMSFRDGG GIKVKATFGE AIIRFTLLPS WGYTELQQEI TRRFNIVDVS 840 WFDLKYLDDD EEWVLLTCEA DLEECIDIYR SSQSQTIKIS LHDPFQVKLG GSFGSSGPS

Sequence ? help Back to Top

Protein Sequence Length: 899 aa Download sequence Send to blast

MGLDMEDDGG SDGGEGNGGF SPNSSFGAFP ETAMDLDFMD ELLFDGCWLE TTDSKSLKET  60
EEAASDSTAM NANSSFLCFG ENPSQDNFSN EETERMNQEG FDQAEKFLLD EAEVGRSWWI  120
APRTREDPCS SVKERLLRAI SGLEEAVPDK DFLVQIWVPF QQEGKNFLTT LAQPHLFNQK  180
YSSLAKYRHV SETYNFPADE GSTEGGLPGR VFLQKFPEWT PDVRFFRSDE YPRIKEAQKC  240
DVRGSLALPV FERCSGTCLG VVEVVTTTQK MNYRPELENI CKALEAVDLR SSSNLKPPNN  300
ESLQVYNDFY YAALPEISDF LASVCRRYDL PLALSWAPCA QQGKGGSRHS DENFSQCVST  360
IDSACFVLDE ESKYFLEACS EHHLLQGEGI VGKAFKATKL CFVPEVTTFS KTNYPLAHHA  420
KISGLHAALA VPLKSKCNGL VEFVLEFFFP KGCLDTEAKQ EMLKSLSATL QQDFRSSNLV  480
IDKDLELEVV LPVREDMVLS ENPLTGAETA EALREIHLLQ ESSWISHMIK ANEKGKDVSL  540
SWEYQNEDPK DEFKLSPGWD NSQLDPAPNN IPSEAEQFQQ GSTPGLRVDA GPSTESASTG  600
GRRPGEKRRT KTEKTIGLDV LRQYFAGSLK DAAKSIGVCP TTLKRICRHH GITRWPSRKI  660
KKVGHSLKKL QLVMDSVQGA QGSIPLDSFY TSFPELSSPN ISSNGSSLKN NEQLHHYNVP  720
IENGGPGEDK PAPRSPSSSC SGSNTNTPNA DGVVKEAHSE AELQNGNQEE TKCLARTQSH  780
NIFKEPPLPG SSKMSFRDGG GIKVKATFGE AIIRFTLLPS WGYTELQQEI TRRFNIVDVS  840
WFDLKYLDDD EEWVLLTCEA DLEECIDIYR SSQSQTIKIS LHDPFQVKLG GSFGSSGPS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009121154.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009121154.1	0.0	PREDICTED: protein NLP1 isoform X1
Refseq	XP_009121155.1	0.0	PREDICTED: protein NLP1 isoform X1
Refseq	XP_009121156.1	0.0	PREDICTED: protein NLP1 isoform X1
Refseq	XP_013666605.1	0.0	protein NLP1-like isoform X1
Refseq	XP_013666606.1	0.0	protein NLP1-like isoform X1
Refseq	XP_013666607.1	0.0	protein NLP1-like isoform X1
Swissprot	Q8H111	0.0	NLP1_ARATH; Protein NLP1
TrEMBL	A0A3P6BIG6	0.0	A0A3P6BIG6_BRACM; Uncharacterized protein
STRING	Bra002025.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	0.0	Nin-like family protein

Publications ? help Back to Top
Suzuki W,Konishi M,Yanagisawa S The evolutionary events necessary for the emergence of symbiotic nitrogen fixation in legumes may involve a loss of nitrate responsiveness of the NIN transcription factor. Plant Signal Behav, 2014. [PMID:24270631]