PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009121152.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 253aa MW: 27545.8 Da PI: 9.2025 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 62 | 83 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cgk F ++ L+ H+r+H XP_009121152.1 62 PCKVCGKKFWSSKALHGHMRSH 83 5********************9 PP | |||||||
2 | zf-C2H2 | 13.8 | 0.00017 | 130 | 150 | 1 | 21 |
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 ++C+ C+k+F ++ L Hi XP_009121152.1 130 FECEGCKKVFESRQALDGHIC 150 89***************9996 PP | |||||||
3 | zf-C2H2 | 16.7 | 2e-05 | 187 | 209 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k Fs+ L H+r+H XP_009121152.1 187 HRCDICSKAFSSGQALGGHMRRH 209 79********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.889 | 61 | 88 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.039 | 61 | 83 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.91E-5 | 62 | 86 | No hit | No description |
Pfam | PF13912 | 1.7E-5 | 63 | 85 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 63 | 83 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 7.5E-5 | 63 | 83 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 8.9E-4 | 129 | 148 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.48E-7 | 130 | 152 | No hit | No description |
SMART | SM00355 | 86 | 130 | 150 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.48E-7 | 182 | 209 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.2E-4 | 186 | 209 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.887 | 187 | 216 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 9.9E-12 | 187 | 210 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0066 | 187 | 209 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 189 | 211 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MNNNLDLDLN LNPPSSPSNV TPSSHNQAPR RKRTRRTSNN EATSSSSSRR KPDPNAPLIT 60 EPCKVCGKKF WSSKALHGHM RSHPERQWRG INPPPNHQPT APPVSVTAEE GQVLANASTT 120 GSSVGVGGRF ECEGCKKVFE SRQALDGHIC SAILNLNVDP PPPSAPQEIV DEDDKSKSVM 180 VVSEMNHRCD ICSKAFSSGQ ALGGHMRRHW HKDRKEKKQA STGIDLNVPA STNLPGSSSD 240 TLPESSLDLR LRL |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the germ cells following microspore division, increases during development and persists into mature pollen. {ECO:0000269|PubMed:24876252}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed exclusively in pollen. {ECO:0000269|PubMed:24876252}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009121152.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009121152.1 | 0.0 | PREDICTED: zinc finger protein ZAT2 | ||||
Refseq | XP_013724919.1 | 0.0 | zinc finger protein ZAT2-like | ||||
Swissprot | Q9SIJ0 | 1e-67 | ZAT2_ARATH; Zinc finger protein ZAT2 | ||||
TrEMBL | A0A397YPB2 | 0.0 | A0A397YPB2_BRACM; Uncharacterized protein | ||||
STRING | Bra002027.1-P | 1e-125 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20315 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17180.1 | 6e-57 | C2H2-like zinc finger protein |