PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009121138.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 472aa MW: 52428.2 Da PI: 5.7914 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.6 | 4.6e-16 | 49 | 96 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +l+d+vk++G g+W+t+ ++ + R++k+c++rw ++l XP_009121138.1 49 KGPWTSTEDGILIDYVKRHGEGNWNTVQKHTSLARCGKSCRLRWANHL 96 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 50.1 | 6.3e-16 | 102 | 145 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE++l+v+ ++++G++ W+ a++++ gRt++++k++w++ XP_009121138.1 102 KGAFSKEEEQLIVEMHARMGNK-WAQMAEHLP-GRTDNEIKNYWNT 145 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.927 | 44 | 96 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.05E-28 | 48 | 143 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.6E-11 | 48 | 98 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-22 | 50 | 103 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.08E-9 | 51 | 96 | No hit | No description |
Pfam | PF13921 | 6.5E-15 | 52 | 112 | No hit | No description |
PROSITE profile | PS51294 | 25.079 | 97 | 151 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-16 | 101 | 149 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-24 | 104 | 150 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.82E-12 | 104 | 145 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 472 aa Download sequence Send to blast |
MVEREMSYTM VTDESDDAMY SSIYNESPSA ADNIGSGCTS RGKGSVLKKG PWTSTEDGIL 60 IDYVKRHGEG NWNTVQKHTS LARCGKSCRL RWANHLRPNL KKGAFSKEEE QLIVEMHARM 120 GNKWAQMAEH LPGRTDNEIK NYWNTRIKRR QRAGLPLYPP GTHVEDLHWS QEYHPSTSNV 180 TDRRRHQDIL QLGNSKANVL FDDLTFANVL FEDLNFATSL LPVASDISDM LGTGASSYMS 240 PILPSHSNIR QAFQSPEHFQ NAAPQKNPRS CSISDHPLYG NQHRTDVMIQ DSHHTFTDGM 300 VPTSKPLFGA VKLELPSFQY SEASGFDQWT TPSTPQSDLL DSVDTYIQSP PPLEIDEPDC 360 FSSCDTGLLD MLLHEAKIKA SAKHSFSSTT CATDGTQDVP RGGDTHNVTS GAGGNSSVVK 420 TEELDQVWEP KRADVIRPDV LLESSWQDQQ SRFGIVRDSS SLNDALALLL GG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-32 | 47 | 150 | 5 | 107 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: In germinating seeds, present in the root tip and in a linear array of up to 20 to 30 cells above the root tip. Strongly expressed in the inflorescence apex, and, to some extent, in the inflorescence stem, the vascular tissue, and the vascular tissue in leaf primordia (PubMed:11743113). In flowers, expressed in sepals, style, receptacle, anther filaments, and connective but not in anthers themselves (PubMed:15722475). {ECO:0000269|PubMed:11743113, ECO:0000269|PubMed:15722475}. | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in roots (e.g. root tips), stems, pollen, shoot apices, flowers and floral shoot tips, and, to a lower extent, in leaves and siliques. {ECO:0000269|PubMed:11743113, ECO:0000269|PubMed:15722475, ECO:0000269|PubMed:24278028}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of alpha-amylase expression that binds to 5'-CAACTGTC-3' motif in target gene promoter (PubMed:11743113). In vegetative tissues, inhibits growth by reducing cell proliferation. Promotes the expression of aleurone-related genes (e.g. CP1, CP, GASA1, BXL1 and BXL2) in seeds. Together with MYB33 and MYB101, promotes the programmed cell death (PCD) the vacuolation of protein storage vacuoles (PSVs) in the aleurone layers during seed germination (PubMed:20699403). Together with MYB33, facilitates anther and tapetum development (PubMed:15722475). {ECO:0000269|PubMed:11743113, ECO:0000269|PubMed:15722475, ECO:0000269|PubMed:20699403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009121138.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by microRNA159 (miR159a and miR159b) in vegetative tissues (PubMed:20699403, PubMed:17916625, PubMed:15226253). Specific expression in floral organs and in the shoot apices is regulated via miR159-mediated degradation (PubMed:15722475). Slightly induced by ethylene and salicylic acid (PubMed:16463103). {ECO:0000269|PubMed:15226253, ECO:0000269|PubMed:15722475, ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:17916625, ECO:0000269|PubMed:20699403}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009121138.1 | 0.0 | PREDICTED: transcription factor GAMYB-like isoform X2 | ||||
Swissprot | Q9FR97 | 0.0 | MYB65_ARATH; Transcription factor MYB65 | ||||
TrEMBL | M4CCW1 | 0.0 | M4CCW1_BRARP; Uncharacterized protein | ||||
STRING | Bra002042.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11440.1 | 0.0 | myb domain protein 65 |