PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009121019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 305aa MW: 35006.1 Da PI: 9.5683 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.7 | 8.8e-18 | 19 | 112 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ffkvl ++d +++ + +p +f+++++ k e s++++l+ ++g sW+++l +k+++ y+ ++GW +F ++ngL + + ++F+++g+++f + XP_009121019.1 19 FFKVLRKEDLSSQTMREIPQDFLKSISAK-EFSFKMVLKLPWGSSWRINL--SKYQSFfyYMEKDGWDQFLSDNGLGADELLTFTHKGNMCF--N 108 99*********************999755.799*****************..899888878888****************************..6 PP EEEE CS B3 94 vkvf 97 v+++ XP_009121019.1 109 VSIY 112 6665 PP | |||||||
2 | B3 | 50.7 | 3.2e-16 | 219 | 296 | 4 | 87 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 + ++s+vl +g +pk+f e h+ k e++ ++ d++g +sWev++ ++k ++ +++GW + vk+ gL+ gDf++F+l++ XP_009121019.1 219 TIKKSYVLFLG---VPKRFGEMHMPK--EETVFKIHDRKGkKSWEVTYVVSKIQS--RFSRGWPRLVKDFGLEIGDFCTFELIKP 296 55667777665...9*****999855..44589999*99989******5555555..599*********************9874 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-19 | 12 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-20 | 14 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.36E-18 | 17 | 112 | No hit | No description |
Pfam | PF02362 | 3.4E-15 | 19 | 111 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-20 | 19 | 115 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.985 | 19 | 115 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-18 | 213 | 303 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.323 | 213 | 305 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.15E-16 | 214 | 297 | No hit | No description |
SuperFamily | SSF101936 | 3.34E-19 | 214 | 303 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.1E-15 | 216 | 304 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-13 | 219 | 298 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MATNSCIGML MDESDNPGFF KVLRKEDLSS QTMREIPQDF LKSISAKEFS FKMVLKLPWG 60 SSWRINLSKY QSFFYYMEKD GWDQFLSDNG LGADELLTFT HKGNMCFNVS IYQINCLEML 120 RPNRSATIAS SSSRNKREEV SNGKEEERES LSASNYPVSE TAESTVGGRL KQKRQLINLG 180 KKQVKKAEKA NKCKKRKMDT ESDDSEDGTS SLAPEFTLTI KKSYVLFLGV PKRFGEMHMP 240 KEETVFKIHD RKGKKSWEVT YVVSKIQSRF SRGWPRLVKD FGLEIGDFCT FELIKPTEMI 300 LTVSK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00517 | DAP | Transfer from AT5G18090 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009121019.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009121019.1 | 0.0 | PREDICTED: B3 domain-containing protein At5g18090 | ||||
Swissprot | Q9FK61 | 1e-115 | Y5809_ARATH; B3 domain-containing protein At5g18090 | ||||
TrEMBL | A0A078HJ49 | 0.0 | A0A078HJ49_BRANA; BnaA10g16730D protein | ||||
STRING | Bra002132.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18090.1 | 1e-112 | B3 family protein |
Publications ? help Back to Top | |||
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