PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009120963.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 436aa    MW: 46474.7 Da    PI: 7.9312
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009120963.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.11.3e-124772227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    +++ C +++rtG C yG+rC+F+H+p
  XP_009120963.1 47 DEPDCIYYLRTGVCGYGSRCRFNHPP 72
                    6899********************97 PP
2zf-CCCH38.91.4e-1293118227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C++f+rtGtCk+G++Ck++H++
  XP_009120963.1  93 GQPVCQHFMRTGTCKFGASCKYHHPR 118
                     5789********************96 PP
3zf-CCCH38.81.6e-12139163226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++++rtG+Ck+G++C+F+H+
  XP_009120963.1 139 GEKECSYYMRTGHCKFGSTCRFHHP 163
                     7899********************9 PP
4zf-CCCH421.5e-13269294126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ++++ C++f+rtG Ck+G++C+F+H+
  XP_009120963.1 269 PGEPDCQYFMRTGDCKFGASCRFHHP 294
                     5789*********************9 PP
5zf-CCCH37.53.9e-12314340127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++t++C++fa+ G+Ck+G+ CkF H++
  XP_009120963.1 314 PGTAPCSHFAQHGICKFGPDCKFDHSM 340
                     68***********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.5E-54572IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3714573IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-104772IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-65074IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-55171IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-691118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.27791119IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-1093118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-693119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-596118IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-6137164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.76137165IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-10139163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6140165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4143162IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7268295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.788268296IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10270294IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-6273296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-5274294IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-7313340IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793313341IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6314341IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-9314339IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-5316339IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MERYGRVGEE GPRADPSPPG TETGLEGSMW RLGLRGGGGE SFPERPDEPD CIYYLRTGVC  60
GYGSRCRFNH PPNRVPVLGG LRTEPGEFPE RMGQPVCQHF MRTGTCKFGA SCKYHHPRQR  120
GGDSVTVSLN YMGFPLRPGE KECSYYMRTG HCKFGSTCRF HHPLPPGAQP PSHQQQLSTG  180
SAIYPSLQSQ SGVFVARPQL LPGSYVQSPY GTYSQMVLPP PGMVPYPGWN PYQASPGSQP  240
SMGSSSVPLA PAYQTSLSSN KEQSFPQRPG EPDCQYFMRT GDCKFGASCR FHHPLEAAPP  300
KGVNLSNIGL PLRPGTAPCS HFAQHGICKF GPDCKFDHSM GSSSLSYSTS ASSLTYPPGS  360
SSLGTLAASS SSTSDQRTEL HSSSSVKPKT TTSGGSETVS AGVSSSMTGG VSESEPVAET  420
KNGDSASIED EVKASS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.166010.0bud| flower| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009120963.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120963.10.0PREDICTED: zinc finger CCCH domain-containing protein 58-like
SwissprotQ6NPN30.0C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLM4CD860.0M4CD86_BRARP; Uncharacterized protein
STRINGBra002167.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]