PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009120931.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 251aa MW: 25862.9 Da PI: 10.0977 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.7 | 3.5e-07 | 36 | 59 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++Gd+C+F H XP_009120931.1 36 KSKPCTKFFSTSGCPFGDNCHFLH 59 7789******************** PP | |||||||
2 | zf-CCCH | 33.4 | 7.8e-11 | 217 | 242 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+ C +fa+ G C +GdrC+FaHg+ XP_009120931.1 217 FKTKMCERFAK-GNCTFGDRCHFAHGE 242 69*********.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.068 | 34 | 61 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.084 | 34 | 62 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-6 | 35 | 61 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-8 | 36 | 59 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-5 | 36 | 59 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 4.24E-15 | 103 | 184 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 4.2E-11 | 113 | 183 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 1.3E-15 | 113 | 182 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 14.32 | 114 | 178 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 1.7E-11 | 116 | 180 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 2.90E-13 | 116 | 178 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 6.6E-16 | 211 | 246 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-8 | 216 | 246 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.1E-7 | 216 | 242 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.765 | 216 | 243 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-7 | 217 | 242 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MDTRKRAGSF NSNGGGGGFK KSKQEMESYS TGLGSKSKPC TKFFSTSGCP FGDNCHFLHY 60 VPGGYNAVAQ LTNMALPMPQ ASRNMQGPGG GGGGRFSGRG GESGPGHVSS FGASATAKIS 120 VDASLAGAII GKGGVSSKQI CRQTGAKLSI QDHERDPNLK NIELEGTFEQ INEASVMVRE 180 LIGRLNSAAS RRPPGGGGGG IGGGVGSEGK PHPGSNFKTK MCERFAKGNC TFGDRCHFAH 240 GEAELRRSGV A |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.8401 | 0.0 | bud| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009120931.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009120938.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 36-like | ||||
Swissprot | Q9C7C3 | 1e-138 | C3H36_ARATH; Zinc finger CCCH domain-containing protein 36 | ||||
TrEMBL | A0A398ASP0 | 1e-179 | A0A398ASP0_BRACM; Uncharacterized protein | ||||
STRING | XP_006407365.1 | 1e-146 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2336 | 28 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 1e-119 | C3H family protein |
Publications ? help Back to Top | |||
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