PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009120826.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 208aa    MW: 24127 Da    PI: 9.6065
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009120826.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.64.5e-25958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien  nr vtfskRrng+ KKA+E+ vLCda+va+i+f+s+gk+ +y+
  XP_009120826.1  9 KRIENVNNRVVTFSKRRNGLVKKAKEITVLCDAKVALIVFASNGKMTDYC 58
                    79*********************************************997 PP
2K-box77.92.5e-26711701100
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     yqk sgk+l++ak+e+l++e++k+kke+++Lq e+Rhl+Ged++sL+lk+L  +e+++e++l k+R++++e+l+++ ++ +++ +e+++   +L+
  XP_009120826.1  71 YQKLSGKKLWDAKHENLSNEIDKIKKENDSLQLELRHLKGEDIQSLNLKNLVAVEHAVEHGLDKVRDHQMEYLMTKKRNEKMMVEENRQLSFQLQ 165
                     899******************************************************************************************** PP

           K-box  96 kklee 100
                     ++ +e
  XP_009120826.1 166 QQEME 170
                     *9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.0E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.151161IPR002100Transcription factor, MADS-box
CDDcd002653.14E-37280No hitNo description
SuperFamilySSF554551.7E-33296IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-26323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-211057IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-263859IPR002100Transcription factor, MADS-box
PfamPF014861.8E-1682164IPR002487Transcription factor, K-box
PROSITE profilePS5129713.96284170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MGRGKIEIKR IENVNNRVVT FSKRRNGLVK KAKEITVLCD AKVALIVFAS NGKMTDYCCP  60
SMDLGAMLDQ YQKLSGKKLW DAKHENLSNE IDKIKKENDS LQLELRHLKG EDIQSLNLKN  120
LVAVEHAVEH GLDKVRDHQM EYLMTKKRNE KMMVEENRQL SFQLQQQEME IASNVRGMMM  180
RNHDAQFGYR VQPIQPNLQQ KIMSLVID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A3e-16191183MEF2 CHIMERA
6bz1_B3e-16191183MEF2 CHIMERA
6bz1_C3e-16191183MEF2 CHIMERA
6bz1_D3e-16191183MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.154850.0bud| flower
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the genetic control of flower development. Is required for normal development of petals and stamens in the wild-type flower. Forms a heterodimer with APETALA3 that is required for autoregulation of both AP3 and PI genes. AP3/PI heterodimer interacts with APETALA1 or SEPALLATA3 to form a ternary complex that could be responsible for the regulation of the genes involved in the flower development. AP3/PI heterodimer activates the expression of NAP. AP3/PI prevents GATA22/GNL and GATA21/GNC expression (PubMed:18417639). {ECO:0000269|PubMed:18417639, ECO:0000269|PubMed:8565821, ECO:0000269|PubMed:9489703}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009120826.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Positively regulated by the meristem identity proteins APETALA1 and LEAFY with the cooperation of UFO. Repressed by silencing mediated by polycomb group (PcG) protein complex containing EMF1 and EMF2. {ECO:0000269|PubMed:11283333, ECO:0000269|PubMed:19783648}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9679630.0KC967963.1 Brassica oleracea var. viridis PI.c (PI.c) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120826.11e-153PREDICTED: floral homeotic protein PISTILLATA-like
SwissprotP480071e-143PIST_ARATH; Floral homeotic protein PISTILLATA
TrEMBLA0A397XL221e-149A0A397XL22_BRACM; Uncharacterized protein
STRINGBo3g014100.11e-145(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53002751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.11e-145MIKC_MADS family protein
Publications ? help Back to Top
  1. Zhang Y, et al.
    A cucumber DELLA homolog CsGAIP may inhibit staminate development through transcriptional repression of B class floral homeotic genes.
    PLoS ONE, 2014. 9(3): p. e91804
    [PMID:24632777]
  2. Jing D, et al.
    Ectopic expression of a Catalpa bungei (Bignoniaceae) PISTILLATA homologue rescues the petal and stamen identities in Arabidopsis pi-1 mutant.
    Plant Sci., 2015. 231: p. 40-51
    [PMID:25575990]
  3. Behrend A,Borchert T,Hohe A
    "The usual suspects"- analysis of transcriptome sequences reveals deviating B gene activity in C. vulgaris bud bloomers.
    BMC Plant Biol., 2015. 15: p. 8
    [PMID:25604890]
  4. Morroll SM,Wilson ZA
    Arabidopsis YAC restriction mapping.
    Genome, 1998. 41(6): p. 806-17
    [PMID:9924791]