PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009120578.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARF | ||||||||
Protein Properties | Length: 759aa MW: 83867.3 Da PI: 6.9936 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.4 | 6.5e-24 | 165 | 266 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+++ L +gD v+F ++++ XP_009120578.1 165 FCKTLTASDTSTHGGFSVPRRAAEDCfapldyK-QQRPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKSLVSGDAVLFL--RDEN 256 99****************************963.3445679************************************************..5689 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_009120578.1 257 GELRLGIRRS 266 999****986 PP | |||||||
2 | Auxin_resp | 125.5 | 3.4e-41 | 290 | 371 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+s+ks+F+v+Y+Pra++seFv+++ek+ +++k+++++G+Rf+m+fe++ds+err++G+v+gv d+dp+rWpnSkWr+L XP_009120578.1 290 VANAVSNKSMFHVFYSPRATHSEFVIPYEKYITSIKNPICIGTRFRMRFEMDDSPERRCAGVVTGVCDMDPYRWPNSKWRCL 371 689******************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.6E-40 | 156 | 277 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.05E-42 | 159 | 281 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.45E-21 | 163 | 265 | No hit | No description |
SMART | SM01019 | 3.7E-23 | 165 | 267 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.6E-22 | 165 | 266 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.422 | 165 | 267 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.3E-35 | 290 | 371 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 5.2E-8 | 635 | 713 | No hit | No description |
PROSITE profile | PS51745 | 19.68 | 638 | 720 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 759 aa Download sequence Send to blast |
MEFDLNTEFA EVEEEENDKG KRLGVSPSSS SSCSSGSSSS SSTTASASSI YSELWHACAG 60 PLTSLPKKGN VVVYFPQGHL EQGAMVSYSS PLDIPKLDLS PQIFCRVANV HLLANKETDE 120 VYTQVTLLPL QELSVLNGEG KEVRELGGDE EKNGSSSVKK TPHMFCKTLT ASDTSTHGGF 180 SVPRRAAEDC FAPLDYKQQR PSQELIAKDL HGVEWKFRHI YRGQPRRHLL TTGWSIFVSQ 240 KSLVSGDAVL FLRDENGELR LGIRRSARPR NGLPDSIIQK YSSSSILSLV ANAVSNKSMF 300 HVFYSPRATH SEFVIPYEKY ITSIKNPICI GTRFRMRFEM DDSPERRCAG VVTGVCDMDP 360 YRWPNSKWRC LLVRWDESFM SDHQERVSPW EIDPSGSLPP LSIQSSPRPK RPWAGLLGTT 420 TPQGNPITAE RGGFLDFEES VRPSKVLQGQ ENIGSATSSS PLQGFDVMNR RILDFAGMQQ 480 SHANPLLLSS RVKDRFGEFV DSTSLDLDRF PRVLQGQEIC SLRSFPQIAG LSPGKASLGY 540 NGAFAYQANK TSFYPLASQG IRSSHIPYQS AGDKSLSHPS SRKFDAQGEG GGLPKIDMMG 600 AEKGREVNMN ASTTGCKLFG FSLPVGTPAS NQQSSSKRIC TKVHKQGSLV GRAIDLSRLN 660 GYNVLLTEFE RLFNMEGLLR DPEKGWRILY TDSENDMMVV GDDPWHDFCS VVLKIHLYTK 720 EEVENGNDDN RSCLEQAALM MEASKSSSVS QPDSSPTGH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-113 | 33 | 397 | 2 | 357 | Auxin response factor 1 |
4ldy_B | 1e-113 | 33 | 397 | 2 | 357 | Auxin response factor 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009120578.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979464 | 0.0 | JN979464.1 Brassica rapa subsp. pekinensis auxin response factor 4 (ARF4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009120578.1 | 0.0 | PREDICTED: auxin response factor 4 isoform X1 | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | A0A3P6DCR5 | 0.0 | A0A3P6DCR5_BRACM; Auxin response factor | ||||
STRING | Bra002479.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9530 | 26 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | auxin response factor 4 |