PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009120457.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 597aa    MW: 67371.2 Da    PI: 6.261
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009120457.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS392.83.8e-1202105841374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfs 94 
                     l++lL++cA+av+s d+++a++ L++++ ++sp+gd +qRla+yf+eAL+ar+++  ++ l+ a+p+s+ts   +++ l+a+klf++v+Pi+   
  XP_009120457.1 210 LRSLLTQCAQAVASFDHRRATEKLKEIRSNSSPSGDGIQRLAFYFAEALEARITGiISPPLCTAFPSSTTS---MVDILKAYKLFVHVCPIYVAD 301
                     6899***************************************************8889999999999998...********************* PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                     +++aN+ I+e + +++++HiiDf++ +G+QWp+Ll aL++Rp+gpp+lR+Tg++ p+sg   ++++eetg+rL++f++ ++vpfefn+ +ak++e
  XP_009120457.1 302 YFAANKSIYELALSSTKLHIIDFGVLYGFQWPCLLLALSKRPGGPPKLRVTGIELPQSGfrPSDRVEETGRRLKRFCDMFNVPFEFNF-IAKKWE 395
                     **********************************************************9*****************************.7***** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres..e 280
                     +++l+e+ + pgE+++Vn++++l++++de+vsl+s+rd+vLkl+++++P+++v++e +  +ns+ F++rf eal ++s+lfd++++++ +e+  +
  XP_009120457.1 396 SITLDEITITPGETTVVNCIHRLQYTPDETVSLDSPRDTVLKLFRDINPDLFVFAEINGTYNSPFFMTRFKEALFHFSSLFDMFDTTIQAEDeyK 490
                     ***************************************************************************************99998899 PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +r+ +Erell r++++v++ egaer++r et+++Wr r+ +aGF+p+ +s+++ k ak ++rk + + + ++ + +++++gWk+r ++++S+W+
  XP_009120457.1 491 NRALLERELLVRDAMSVISSEGAERFARPETYKQWRVRILRAGFRPAMISKEILKGAKEIVRKRYHKDFLIDGDGNWMLQGWKGRVIYAFSCWK 584
                     *****************************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.077184564IPR005202Transcription factor GRAS
PfamPF035141.3E-117210584IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MDALLQVSVD GFRFDGSGSG SCCKPRNNLE TQNQSSPPSI CQDNAPVLKY INDMLMDEED  60
FVEDNLALEA AERSFHELLH QPPSSESSDQ NSTSSGDHDC SFPSTTTTTT DSAGSLVSNG  120
ESQRKYRHRD NEEDDLENGR RNKQPAIFVS EMEELAAKFE HVLLVCKSNQ EEDSSSTTTT  180
TKKQNPPPPP NKATGRAKGS KAIKANAVDL RSLLTQCAQA VASFDHRRAT EKLKEIRSNS  240
SPSGDGIQRL AFYFAEALEA RITGIISPPL CTAFPSSTTS MVDILKAYKL FVHVCPIYVA  300
DYFAANKSIY ELALSSTKLH IIDFGVLYGF QWPCLLLALS KRPGGPPKLR VTGIELPQSG  360
FRPSDRVEET GRRLKRFCDM FNVPFEFNFI AKKWESITLD EITITPGETT VVNCIHRLQY  420
TPDETVSLDS PRDTVLKLFR DINPDLFVFA EINGTYNSPF FMTRFKEALF HFSSLFDMFD  480
TTIQAEDEYK NRALLERELL VRDAMSVISS EGAERFARPE TYKQWRVRIL RAGFRPAMIS  540
KEILKGAKEI VRKRYHKDFL IDGDGNWMLQ GWKGRVIYAF SCWKPAEKLT RDDHIII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-4221658525380Protein SCARECROW
5hyz_A1e-422105845375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.314260.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in leaves and sepals. Expressed in siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009120457.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120457.10.0PREDICTED: scarecrow-like protein 11
SwissprotQ9LTI50.0SCL11_ARATH; Scarecrow-like protein 11
TrEMBLA0A3P6CHI50.0A0A3P6CHI5_BRACM; Uncharacterized protein
STRINGBo9g139410.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59450.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]