PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009120317.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 302aa MW: 31795.4 Da PI: 5.9638

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009120317.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.3	9.8e-12	109	154	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+ K +Ka++L + +eY++ Lq XP_009120317.1 109 HSIAERLRRERIAERMKSLQELVPNT-----NKTDKASMLDEIIEYVRFLQ 154 99*********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.7E-16	102	162	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.64E-12	102	158	No hit	No description
PROSITE profile	PS50888	17.028	104	153	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.8E-16	106	161	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.7E-9	109	154	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.2E-13	110	159	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MENGNGEGKG EFINQNNSDY FLDSMSMLSS LPPCWDSSLP PPHPPPPQSL LHALTVDASF 60 PDQFHHPQES GGPSQDGLQA QGTVSTTSAP VACQKPRVRA RRGQATDPHS IAERLRRERI 120 AERMKSLQEL VPNTNKTDKA SMLDEIIEYV RFLQLQVKVL SVSRLGGARA AGGPGFNGLT 180 SEVGGRLNPL SGPSNGLNGK GNGTGSSNES LRSTEQRVAK LMEEDMGSAM QYLQGKGLCL 240 MPISLATAIS STSNHSRGAL FNPISNIVAA EEANVANASA SAAAAAPEAS TSMEDDVSAS 300 KA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	118	RLRRER

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in trichomes of the root maturation zone. Detected constitutively in flowers. {ECO:0000269\|PubMed:12679534, ECO:0000269\|PubMed:16581911}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009120317.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009120317.1	0.0	PREDICTED: transcription factor bHLH82-like
Swissprot	Q9LSQ3	1e-172	BH082_ARATH; Transcription factor bHLH82
TrEMBL	D7MNY8	1e-171	D7MNY8_ARALL; Basic helix-loop-helix family protein
STRING	fgenesh1_pm.C_scaffold_8001435	1e-172	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11585	17	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	1e-129	LJRHL1-like 3

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tam TH,Catarino B,Dolan L Conserved regulatory mechanism controls the development of cells with rooting functions in land plants. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68 [PMID:26150509] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]