PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009119873.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 364aa    MW: 41351.4 Da    PI: 4.4412
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009119873.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-19132181255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr+++ +g+W+AeIrdp +   r+r++lg+f taeeAa  +++a+ +l+g
  XP_009119873.1 132 KFRGVRQRP-WGKWAAEIRDPEQ---RRRIWLGTFETAEEAAVVYDNAAIRLRG 181
                     89*******.**********743...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.4E-30131189IPR001471AP2/ERF domain
SMARTSM003802.7E-39132195IPR001471AP2/ERF domain
CDDcd000181.12E-33132188No hitNo description
SuperFamilySSF541711.5E-21132190IPR016177DNA-binding domain
PROSITE profilePS5103223.775132189IPR001471AP2/ERF domain
PfamPF008475.0E-12132181IPR001471AP2/ERF domain
PRINTSPR003672.7E-10133144IPR001471AP2/ERF domain
PRINTSPR003672.7E-10155171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MMEEYFDFRP LKYTEHKTSV TKYTKKSPAK NPSGETRPDS VRIVRVSVTD HYATDSSSDE  60
EEEEDFLFPR RRVKRFVNEI KVEPACNNNN INTTGVSMKD RKRLSDETQS PATSRHRRPL  120
KVSIPSAHNG RKFRGVRQRP WGKWAAEIRD PEQRRRIWLG TFETAEEAAV VYDNAAIRLR  180
GPDALTNFSI PPQSQEEEEE EPENPVIDKP ENNITTTTTT TTTSSSESTE DFQHLSSPTS  240
VLNIRPSEDI QQPFKSAKPE PETSDAPWWH TGFSSGSGES DDSFPLDTPF LDSYFNESPP  300
EISVFDQPMG QVFSENEDIF NDMFLGGESM MMNIGEEFTS SSIKDIGSMF SDFDDSLISD  360
LLLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-22130196370ATERF1
3gcc_A3e-22130196370ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009119873.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009119873.10.0PREDICTED: ethylene-responsive transcription factor CRF3-like
SwissprotQ9FK121e-156CRF3_ARATH; Ethylene-responsive transcription factor CRF3
TrEMBLM4CFT60.0M4CFT6_BRARP; Uncharacterized protein
STRINGBra003068.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.11e-135cytokinin response factor 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]
  3. Jeon J,Cho C,Lee MR,Van Binh N,Kim J
    CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis.
    Plant Cell, 2016. 28(8): p. 1828-43
    [PMID:27432872]