PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009119797.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 329aa    MW: 37402.3 Da    PI: 8.9389
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009119797.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.66.5e-36321242103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+++++++sw ++ ++f+v+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fk+g+k+ll++
  XP_009119797.1  32 FLTKTYQLVDDPATDHVVSWGDDDTTFIVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKRGEKHLLCE 117
                     9*****************************************************************99.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k++
  XP_009119797.1 118 IHRRKTS 124
                     ****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.4E-3824116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-6028121IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.25E-3429121IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.4E-203255IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.8E-3232121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.4E-207082IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407195IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.4E-208395IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MAKMLENSYG YGTGERIQLM VEGQGKAVPA PFLTKTYQLV DDPATDHVVS WGDDDTTFIV  60
WRPPEFARDL LPNYFKHNNF SSFVRQLNTY GFRKIVPDRW EFANEFFKRG EKHLLCEIHR  120
RKTSQMIPNQ HSPFITHHPP PQIPFSGGAS FFPLPPRADA SAAMDDHYWC ESPSPRPRVV  180
PTTADAQVAV LTEDNERLRR TNTVLMSELA HMKKLYNDII YFVQNHVKPV APSNSFLQKQ  240
QQPPPPPPPI DYYNNATVPN HSPPTSQSSI TLLEDDTNPE SITRKTKLFG VSLASSKKRS  300
HHFSDQSSKT RLVLDKSDLG LNLMTASTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-222812417123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1296300KKRSH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.283341e-51flower
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009119797.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009119797.10.0PREDICTED: heat stress transcription factor B-4-like
RefseqXP_013640015.10.0heat stress transcription factor B-4-like
SwissprotQ9C6350.0HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A397XIQ10.0A0A397XIQ1_BRACM; Uncharacterized protein
STRINGBra040634.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29002866
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.10.0heat shock transcription factor B4