PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009119661.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 344aa    MW: 38879.3 Da    PI: 7.033
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009119661.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B393.12.1e-2952151193
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS..S CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr..s 88 
                     f+kv tps v+k +rlv+pk++ae++    + ++++++ l ++d++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  +
  XP_009119661.1  52 FDKVVTPSAVGKPNRLVIPKQHAERYfpldSTNNQNGTLLNFQDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGiGDesQ 146
                     89***************************955566889*************************************************54355223 PP

                     EE..E CS
              B3  89 efelv 93 
                     + +l+
  XP_009119661.1 147 RSKLY 151
                     44444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-3945159IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.4E-2848140IPR015300DNA-binding pseudobarrel domain
CDDcd100177.78E-2450146No hitNo description
SMARTSM010196.5E-1952158IPR003340B3 DNA binding domain
PROSITE profilePS5086314.52252158IPR003340B3 DNA binding domain
PfamPF023621.6E-2652154IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDLSLAPTSS DQEQDKDQEL ASNIGASSSS GTANNTNFPM MMIPPPEKEH MFDKVVTPSA  60
VGKPNRLVIP KQHAERYFPL DSTNNQNGTL LNFQDRNGKM WRFRYSYWNS SQSYVMTKGW  120
SRFVKEKKLD AGDIVSFQRG IGDESQRSKL YIDWRHRPDM SLVQTHQFGN YGFNFNFPTT  180
SQYSNRFHPL PEYNSVPIHR SLNIGNHQRS YYNNQRQEFV GYGFGNLAYY TGSPLDQRSI  240
VGSEPLVIES VPVVPGRLPP VMMLPPPLPP PPSTAGKRLR LFGVNMECGN DYDQHEESLL  300
VPRGEMGASS SSALRFNLSN DHDDGDDDQF AKKGKSSFSL DFSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-61461602116B3 domain-containing transcription factor NGA1
5os9_B4e-61461602116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009119661.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0073230.0AC007323.5 Genomic sequence for Arabidopsis thaliana BAC T25K16 from chromosome I, complete sequence.
GenBankAF1965660.0AF196566.1 Arabidopsis thaliana chromosome I, partial sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankFJ8737330.0FJ873733.1 Arabidopsis thaliana ecotype Landsberg erecta NGATHA3 (NGA3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009119661.10.0PREDICTED: B3 domain-containing transcription factor NGA3
SwissprotQ9MAN10.0NGA3_ARATH; B3 domain-containing transcription factor NGA3
TrEMBLM4EWV90.0M4EWV9_BRARP; Uncharacterized protein
STRINGBra033294.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139901724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.11e-178B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]