PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009119488.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 183aa    MW: 19872.4 Da    PI: 9.485
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009119488.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.88.3e-212271255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr ++ +gr++AeIrdp   gk++r++lg+f+taeeAa+a++ a+++++g
  XP_009119488.1 22 HYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEEAARAYDSAAREFRG 71
                    6********.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.6E-382285IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-332279IPR001471AP2/ERF domain
PfamPF008471.1E-142271IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-232281IPR016177DNA-binding domain
PROSITE profilePS5103224.2892279IPR001471AP2/ERF domain
CDDcd000185.87E-322279No hitNo description
PRINTSPR003677.7E-122334IPR001471AP2/ERF domain
PRINTSPR003677.7E-124561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MSPRLENVGH ADAAGGKVKE VHYRGVRKRP WGRYAAEIRD PGKKTRVWLG TFDTAEEAAR  60
AYDSAAREFR GSKATTNFPF SGGVDAGNAF GFGTHVTARE GVCGNNNVSG VLAPKVTGFF  120
LDLPHATASR EELVRGFPVR FEPMEMGLSI GLRTTVEVKR DAADYKLGRD LNLELSLAPS  180
MDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-222280261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-221880164ATERF1
3gcc_A2e-221880164ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009119488.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009119488.11e-132PREDICTED: ethylene-responsive transcription factor 9
SwissprotQ9FE674e-52ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBLA0A397XHP61e-131A0A397XHP6_BRACM; Uncharacterized protein
TrEMBLM4DFJ31e-131M4DFJ3_BRARP; Uncharacterized protein
STRINGBra015266.1-P1e-131(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.13e-43erf domain protein 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  3. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]