PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009119459.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Protein Properties

Length: 266aa MW: 30565.7 Da PI: 10.0365

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009119459.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	35.8	1.4e-11	137	244	1	82
EEEE-..-HHHHT.T-EE--HHH.HTT.................---..--SEEEEEETTS-EEEEEE...........EEETTE....EEE-TT CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh.................ggkkeesktltledesgrsWevkliy.........rkksgr....yvltkG 64 f+k+l sdv+ + +r+ +p k ++++ +gkk +++ l +e++++W++ ++ + yvl +G XP_009119459.1 137 FEKTLFASDVNPNqSRFLIPFKKLKRNdfltqeessfleqdenkKGKK-PGVEALLVNERSQTWSLVFKRwvmkkekdsQ----NgslhYVLNRG 226 8999****9887999*********999999999998864444.568***********9555887643322....26677** PP HHHHHHHHT--TT-EEEE CS B3 65 WkeFvkangLkegDfvvF 82 W++ vk+n+L+++D + + XP_009119459.1 227 WNDIVKDNKLEANDKISL 244 ************8766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03754	7.7E-34	129	233	IPR005508	B3 domain-containing protein
Gene3D	G3DSA:2.40.330.10	2.3E-20	131	260	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	8.24E-19	133	258	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.97E-11	136	257	No hit	No description
PROSITE profile	PS50863	11.321	157	261	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MKSGEDDHYP LRMKIDWSDK VTKTLEEAML KAKSSCIHKF DLNKLPPSDT DDEEQDEAKR 60 RDHKVSSGAP SRFCNNFDLN KSPKEEPPNH DGHKVTQNVL NPKPLKKRGR GSSGRLNKAK 120 KQRLNVVLEV KDAVLIFEKT LFASDVNPNQ SRFLIPFKKL KRNDFLTQEE SSFLEQDENK 180 KGKKPGVEAL LVNERSQTWS LVFKRWVMKK EKDSQNGSLH YVLNRGWNDI VKDNKLEAND 240 KISLWSFRSD GVLCFSLVTH PSTISS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009119459.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009119459.1	0.0	PREDICTED: putative B3 domain-containing protein At3g49610
Swissprot	Q9SCJ8	1e-41	Y3961_ARATH; Putative B3 domain-containing protein At3g49610
TrEMBL	A0A3P6D8W1	0.0	A0A3P6D8W1_BRACM; Uncharacterized protein
TrEMBL	M4DG02	0.0	M4DG02_BRARP; Uncharacterized protein
STRING	Bra015425.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM273	10	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05930.1	5e-31	B3 family protein

Publications ? help Back to Top
Baerenfaller K, et al. Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics. Science, 2008. 320(5878): p. 938-41 [PMID:18436743]