PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009119364.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 390aa MW: 43004.5 Da PI: 7.8966 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.6 | 6.5e-11 | 125 | 148 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 e C+ f+r+G C++Gd C FaHg XP_009119364.1 125 GEVCPEFRRGGDCSRGDDCEFAHG 148 689********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 3.66E-6 | 122 | 152 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.535 | 122 | 150 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.4E-6 | 122 | 149 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-8 | 126 | 148 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-6 | 126 | 150 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.183 | 158 | 182 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4 | 158 | 181 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MDVVRPTVEI PPRKLLLSSK SFSGEASPRS SPRKHNWNNK SNKISTSEQG EDSFNEDNTN 60 NNKDTKEYCY DSDTDDPYAS DHFRMFEFKI RRCTRSRSHD WTDCPFAHPG EKARRRDPRR 120 FQYSGEVCPE FRRGGDCSRG DDCEFAHGVF ECWLHPIRYR TEACKDGKHC KRKLCFFAHS 180 PRQLRVLPPE NDSGGSSASA SPAKNQNPCC LFCSGSPTST LLGNLSHLSR SPSSSPPLSP 240 AHKAAAFSRL RSCAASAAAA GSVNYKDVLN DLVNSLDSIT LAEALQVSSP SPSPVSAAAA 300 AFANASSCGL STQRLHIQQQ QQSSPLQFAL SPSTPSYLAN SPRASFFSDD YTPRQREVNE 360 FTPAAVRDKT RFEDGSCGDP DIGWVNDLLT |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Specifically expressed in seeds. {ECO:0000269|PubMed:18487351}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009119364.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009119364.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 2-like | ||||
Swissprot | Q9ZWA1 | 0.0 | C3H2_ARATH; Zinc finger CCCH domain-containing protein 2 | ||||
TrEMBL | M4DFJ1 | 0.0 | M4DFJ1_BRARP; Uncharacterized protein | ||||
STRING | Bra015264.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2987 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03790.1 | 1e-156 | C3H family protein |
Publications ? help Back to Top | |||
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