PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009119178.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 720aa    MW: 79623.8 Da    PI: 5.8132
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009119178.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.3e-1967123157
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     +++ +++t+ q++e+e++F+++++p+ ++r++L+++lgL+  qVk+WFqN+R+++k+
  XP_009119178.1  67 KKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELGLEPLQVKFWFQNKRTQMKN 123
                     688999************************************************995 PP
2START219.79.8e-692544672206
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                     la +a++el+++ ++eep+W++++  ++++e+ ++f+++ +     +++ea+r+s+vv+m++++ ve+l+d++ qW+  +a    +a tl+v+s+
  XP_009119178.1 254 LAVSAMEELMRMTQVEEPLWKSLV--LDEEEYARTFPRGIGpkpagFRTEASRESAVVIMNHVNIVEILMDVN-QWSVVFAgmvsRAVTLAVLST 345
                     67899*******************..************999********************************.********************* PP

                     T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
           START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                     g      galq+m+ae+q+++plvp R+ +f+Ry++q+ +g+w++vd+S+ds q++p     vR++++ Sg+li++++ng+skvtwvehv++++r
  XP_009119178.1 346 GvsgnynGALQVMSAEFQVPTPLVPtRETYFARYCKQQADGSWAVVDISLDSLQPNPP----VRCRRRASGCLIQEMPNGYSKVTWVEHVEVDDR 436
                     *********************************************************8....********************************* PP

                     XXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 176 lphwllrslvksglaegaktwvatlqrqcek 206
                      +h l++++v++g+a+gak+wva l+rqce+
  XP_009119178.1 437 GVHDLYKHMVSTGHAFGAKRWVAILDRQCER 467
                     *****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-2145122IPR009057Homeodomain-like
SuperFamilySSF466894.18E-1959130IPR009057Homeodomain-like
PROSITE profilePS5007116.47164124IPR001356Homeobox domain
SMARTSM003891.6E-1865128IPR001356Homeobox domain
CDDcd000867.94E-1967125No hitNo description
PfamPF000463.2E-1767122IPR001356Homeobox domain
PROSITE patternPS00027099122IPR017970Homeobox, conserved site
PROSITE profilePS5084842.662244470IPR002913START domain
SuperFamilySSF559611.52E-32245469No hitNo description
CDDcd088753.10E-123248466No hitNo description
SMARTSM002344.0E-61253467IPR002913START domain
PfamPF018522.1E-61254467IPR002913START domain
Gene3DG3DSA:3.30.530.201.3E-4350433IPR023393START-like domain
SuperFamilySSF559611.18E-26486712No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MFEPNMFLAA MNNEDSNNHN YNHEDNNNNN ERFLRDEEFD SANTKSGSEN QEGGSGNDQD  60
NHHPNKKKRY HRHTQLQIQE MEAFFKECPH PDDKQRKQLS RELGLEPLQV KFWFQNKRTQ  120
MKNHHERHEN SHLRAENEKL RGDNIRYREA LANASCPNCG GPTVIGEMSF DEHQLRLENA  180
RLREEIDRIS AIAAKYVGKP VSSYPLMSPP PLPPRPLELA MGNFGGDVYG NNPTDLFKSI  240
TAPTESDKPL IIDLAVSAME ELMRMTQVEE PLWKSLVLDE EEYARTFPRG IGPKPAGFRT  300
EASRESAVVI MNHVNIVEIL MDVNQWSVVF AGMVSRAVTL AVLSTGVSGN YNGALQVMSA  360
EFQVPTPLVP TRETYFARYC KQQADGSWAV VDISLDSLQP NPPVRCRRRA SGCLIQEMPN  420
GYSKVTWVEH VEVDDRGVHD LYKHMVSTGH AFGAKRWVAI LDRQCERLAS VMATHISSGE  480
VGVITNQEGR RSMLKLAERM VISFCAGVSA STAHTWTTLS GTGAEDVRVM TRKSVDDPGR  540
PPGIVLSAAT SFWIPVPPKR VFDFLRDENS RNEWDILSNG GVVQEMAHIA NGRDTGNCVS  600
LLRVNSANSS QSNMLILQES CTDPTASFVI YAPVDIVAMN IVLNGGDPDY VALLPSGFAI  660
LPDGNATGGG EGGSLLTVAF QILVDSVPTA KLSLGSVATV NNLIACTVER IKAAMSCETA
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009119178.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3167760.0AK316776.1 Arabidopsis thaliana AT1G05230 mRNA, complete cds, clone: RAFL09-78-H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009119177.10.0PREDICTED: homeobox-leucine zipper protein HDG2
RefseqXP_009119178.10.0PREDICTED: homeobox-leucine zipper protein HDG2
RefseqXP_009119179.10.0PREDICTED: homeobox-leucine zipper protein HDG2
RefseqXP_009119180.10.0PREDICTED: homeobox-leucine zipper protein HDG2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLM4DFX80.0M4DFX8_BRARP; Uncharacterized protein
STRINGBra015401.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2