PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009119084.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 252aa    MW: 28742.9 Da    PI: 5.3737
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009119084.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+  ++++G ++W++ ++  g+ R++k+c++rw +yl
   XP_009119084.1 14 KGPWSAEEDRILISHIRLHGHPNWRALPQLAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding53.17.4e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E+e ++++++ lG++ W++Ia++++ gRt++++k+ w+++l
   XP_009119084.1  67 RGNFTPQEEETIINLHQSLGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-24564IPR009057Homeodomain-like
PROSITE profilePS5129416.221961IPR017930Myb domain
SuperFamilySSF466892.75E-2910108IPR009057Homeodomain-like
SMARTSM007173.9E-131363IPR001005SANT/Myb domain
PfamPF002492.4E-141461IPR001005SANT/Myb domain
CDDcd001671.31E-91661No hitNo description
PROSITE profilePS5129424.90362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-2765116IPR009057Homeodomain-like
SMARTSM007173.1E-1466114IPR001005SANT/Myb domain
PfamPF002492.4E-1567112IPR001005SANT/Myb domain
CDDcd001671.78E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MGRRPCCEKM GLKKGPWSAE EDRILISHIR LHGHPNWRAL PQLAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TPQEEETIIN LHQSLGNRWS AIAAKLPGRT DNEIKNVWHT HLKKRIQHNQ  120
DQNISETICD NDEQLVSVMD EKRPSSPQQQ SSSSTNISAV TTSSNNNDVS NNSSKDSATS  180
LEDVLPFIDE SFWSEVVSMD CNLSGDENRE IKMEDWESSL DSNIKGYNHD MESWFDNLLT  240
SNLTTGENSD IF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.224630.0root| silique
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and flowers. Expressed in shoot apex, axillary buds, at the basis of flowers and branching points of inflorescences. {ECO:0000269|PubMed:9681014}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a regulatory role in meristem function. Functions as component of a regulatory network controlling the establishment and/or development of the shoot system by the regulation of apical meristem function (PubMed:9681014). May play a role in tolerance to boric acid (PubMed:16861809). {ECO:0000269|PubMed:16861809, ECO:0000269|PubMed:9681014}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00127DAPTransfer from AT1G06180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009119084.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), drought, light and wounding in leaves. Down-regulated by drought and ABA in roots. {ECO:0000269|PubMed:9681014}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382790.0KF738279.1 Brassica napus MYB transcription factor 13 (MYB13.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009119084.10.0PREDICTED: myb-related protein Myb4
SwissprotQ9LNC91e-129MYB13_ARATH; Transcription factor MYB13
TrEMBLM4DG580.0M4DG58_BRARP; Uncharacterized protein
STRINGBra015481.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.11e-114myb domain protein 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]