PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009118935.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 223aa    MW: 23337.6 Da    PI: 7.0431
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009118935.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof113.21.2e-352784461
          zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                    + l+cprC+s  tkfCyynny+l qPryfCk+CrryWt+GG+lr+vPvGgg+r++ ++
  XP_009118935.1 27 EPLPCPRCNSIITKFCYYNNYNLLQPRYFCKSCRRYWTQGGTLRDVPVGGGTRRSSSK 84
                    6789*************************************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027011.1E-312883IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.8852983IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103167IPR003851Zinc finger, Dof-type
ProDomPD0074781.0E-193378IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MPSESNQTRS ARVQGSTAAY PPPNLAEPLP CPRCNSIITK FCYYNNYNLL QPRYFCKSCR  60
RYWTQGGTLR DVPVGGGTRR SSSKRNRSFS SNATTASSSS CSSSIITTAN GSEPMNQGTA  120
TNEAKGSHEI SGYGSFASLL SEQSDGAAFL ALGNGSGSGG LDYGFGYGYG LEELSIGYLG  180
GGSGVEIPVV GGGDTWQIGE IEAKSGDSLW PGLEISMQSN GAK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00189DAPTransfer from AT1G47655Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009118935.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0889462e-77AY088946.1 Arabidopsis thaliana clone 103581 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009118935.11e-161PREDICTED: dof zinc finger protein DOF1.6
SwissprotQ9SX974e-77DOF16_ARATH; Dof zinc finger protein DOF1.6
TrEMBLA0A397XR851e-160A0A397XR85_BRACM; Uncharacterized protein
TrEMBLM4DGI41e-160M4DGI4_BRARP; Uncharacterized protein
STRINGBra015609.1-P1e-160(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94652435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47655.14e-48Dof family protein